View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7748_low_2 (Length: 722)

Name: NF7748_low_2
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7748_low_2
NF7748_low_2
[»] chr4 (13 HSPs)
chr4 (161-703)||(12707559-12708107)
chr4 (1-91)||(12708171-12708261)
chr4 (342-670)||(17274242-17274570)
chr4 (1-87)||(11596297-11596383)
chr4 (53-87)||(16303263-16303297)
chr4 (179-241)||(17274621-17274683)
chr4 (1-44)||(12895214-12895257)
chr4 (471-536)||(199669-199735)
chr4 (41-87)||(27706162-27706208)
chr4 (58-87)||(6485613-6485642)
chr4 (54-87)||(30298975-30299008)
chr4 (54-87)||(30327843-30327876)
chr4 (42-87)||(30838238-30838283)
[»] chr7 (8 HSPs)
chr7 (503-670)||(19272773-19272940)
chr7 (2-87)||(11272531-11272617)
chr7 (283-354)||(19272572-19272643)
chr7 (52-87)||(2334278-2334313)
chr7 (41-87)||(24339670-24339716)
chr7 (55-87)||(9408333-9408365)
chr7 (52-87)||(18039027-18039062)
chr7 (52-87)||(27945069-27945104)
[»] chr6 (6 HSPs)
chr6 (17-87)||(21395269-21395339)
chr6 (41-87)||(16766725-16766771)
chr6 (41-85)||(9107355-9107399)
chr6 (52-87)||(9911524-9911559)
chr6 (52-87)||(10770670-10770705)
chr6 (179-234)||(21513309-21513364)
[»] chr8 (6 HSPs)
chr8 (41-87)||(2572041-2572087)
chr8 (1-87)||(8343000-8343086)
chr8 (56-87)||(20873097-20873128)
chr8 (53-87)||(15816126-15816160)
chr8 (53-87)||(16867202-16867236)
chr8 (53-87)||(25566869-25566903)
[»] chr3 (10 HSPs)
chr3 (17-87)||(1509567-1509637)
chr3 (41-85)||(34185108-34185152)
chr3 (474-543)||(15774939-15775009)
chr3 (22-87)||(14747590-14747655)
chr3 (51-87)||(27505274-27505310)
chr3 (56-87)||(55401103-55401134)
chr3 (41-87)||(14209141-14209187)
chr3 (1-35)||(21478777-21478811)
chr3 (2-87)||(34910345-34910435)
chr3 (54-87)||(28918029-28918062)
[»] chr1 (20 HSPs)
chr1 (41-87)||(6612156-6612202)
chr1 (52-87)||(2218267-2218302)
chr1 (17-87)||(113327-113396)
chr1 (41-87)||(5376485-5376531)
chr1 (41-87)||(47989525-47989571)
chr1 (1-49)||(46940748-46940796)
chr1 (56-87)||(22515887-22515918)
chr1 (56-87)||(22881616-22881647)
chr1 (52-87)||(24577182-24577217)
chr1 (56-87)||(41877470-41877501)
chr1 (56-87)||(46348383-46348414)
chr1 (41-87)||(5944311-5944357)
chr1 (41-87)||(9629885-9629931)
chr1 (41-87)||(15449217-15449263)
chr1 (53-87)||(25272510-25272544)
chr1 (41-87)||(28273073-28273119)
chr1 (41-87)||(31694695-31694741)
chr1 (1-35)||(38078601-38078635)
chr1 (17-87)||(1704951-1705023)
chr1 (1-50)||(47989578-47989627)
[»] chr5 (7 HSPs)
chr5 (3-87)||(21351852-21351936)
chr5 (41-87)||(19579729-19579775)
chr5 (41-87)||(21542058-21542104)
chr5 (56-87)||(33178053-33178084)
chr5 (41-87)||(21522778-21522824)
chr5 (41-87)||(21533344-21533390)
chr5 (41-87)||(39698569-39698615)
[»] chr2 (4 HSPs)
chr2 (54-87)||(20539672-20539705)
chr2 (52-87)||(14996219-14996254)
chr2 (41-87)||(30717515-30717561)
chr2 (42-87)||(15657892-15657937)
[»] scaffold0126 (1 HSPs)
scaffold0126 (24-87)||(19172-19235)
[»] scaffold0236 (1 HSPs)
scaffold0236 (53-87)||(25765-25799)
[»] scaffold0025 (1 HSPs)
scaffold0025 (53-87)||(23798-23832)
[»] scaffold0011 (1 HSPs)
scaffold0011 (57-87)||(17750-17780)


Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 161 - 703
Target Start/End: Complemental strand, 12708107 - 12707559
Alignment:
Q  161 cgtattcgtgcttcataggagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatatttataggtggcgggtttcaga------ga 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||      ||    
T  12708107 cgtattcgtgcttcataggagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatatttataggtggagggtttcagaacaagaga 12708008  T
Q  255 aagccgatttttagtgaaaaacacaatctgaatcgattcagagaaagtgtgaatcgactaagagactaaaatgggttctgggaatcatttgaagattgaa 354  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12708007 aagccgatttttagtgaaaaacaaaatctgaatcgattcagagaaagtgtgaatcgactaagagactataatgggttctgggaatcatttgaagattgaa 12707908  T
Q  355 ttgattcagatgaatattgaatcaattcgatggccaaactacgaagattgaaggattcatattgtctcctacatgttttaaaacgattcaaaagtgtccc 454  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12707907 ttgattcagatgaatattgaatcaattcgatgaccaaactacgaagattgaaggattcatattgtctcctacatgttttaaaacgattcaaaagtgttcc 12707808  T
Q  455 aaaaacttcctattttcactgaatcgattcaagatgtcttttatgccattgaatcaaatcacaagtgtaaaagtgcataaaatatagtttgaaaacacat 554  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  12707807 aaaaccttcctattttcactgaatcgattcaagatgtcttttatgccattgaatcaattcacaagtgtaaaagtgcataaaatatagtttgaaaacacaa 12707708  T
Q  555 taaaactatacactttgtaatatatgatttcaatctcaaagtaggttcaataacaagtttatcaaaagttttatgtgtgcaaactatatttttgcaaggt 654  Q
    ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12707707 taaaactatacactttgtaatatatgatttccatctcaaagcatgttcaataacaagtttatcaaaagttttatgtgtgcaaactatatttttgcaaggt 12707608  T
Q  655 gagaataagtcctaaaattaaaggtacacattacacataatctaaaact 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12707607 gagaataagtcctaaaattaaaggtacacattacacataatctaaaact 12707559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 12708261 - 12708171
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattatttca 91  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  12708261 ctatgaagcacggacgctcctcggattaggcgtgttccgatgtccgacatagacacgacatcgacacttgtaattacactgaattatttca 12708171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 342 - 670
Target Start/End: Complemental strand, 17274570 - 17274242
Alignment:
Q  342 tttgaagattgaattgattcagatgaatattgaatcaattcgatggccaaactacgaagattgaa-ggattcatattgtctcctacatgttttaaaacga 440  Q
    ||||||||||||||  ||||||||||| |||||||  |||| |||  ||||||| ||||||||||   |||||||| |||||||||||||||| || |||    
T  17274570 tttgaagattgaatccattcagatgaaaattgaattgattcaatgaacaaactatgaagattgaatcaattcatatagtctcctacatgttttgaatcga 17274471  T
Q  441 ttcaaaagtgtcccaaaaacttcctattttcactgaatcgattcaagatgtcttttatgcca-ttgaatcaaatcacaagtgtaaaagtgcataaaatat 539  Q
    ||||||  ||| |  ||||||   ||||| ||||||| | ||||||| |||| |||||  || ||||||  | |||||||||||||| ||| | ||| ||    
T  17274470 ttcaaacatgt-cataaaactctttatttgcactgaaccaattcaagctgtcctttataacatttgaattgattcacaagtgtaaaattgctttaaa-at 17274373  T
Q  540 agtttgaaaacacattaaaactatacactttgtaatatatgatttcaatctcaaagtaggttcaataaca--agtttatcaaaagttttatgtgtgcaaa 637  Q
    ||||| |||||||| ||| |   || | ||| ||| |||||||||| | |||||||||||||||| ||||  |||||  |||||||||||||  ||||||    
T  17274372 agttt-aaaacacactaagagcctatattttataaaatatgatttccacctcaaagtaggttcaa-aacattagtttcgcaaaagttttatgcatgcaaa 17274275  T
Q  638 ctatatttttgcaaggtgagaataagtcctaaa 670  Q
     ||| ||| ||||||  ||||||||||| ||||    
T  17274274 atatgtttatgcaagaggagaataagtcataaa 17274242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11596297 - 11596383
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||| |  |||||| |||||||||||| |||||||| ||||  ||||||||||| ||||||||||||||||| ||||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaattat 11596383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 16303263 - 16303297
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||||||||||||||||||||||||||    
T  16303263 acacgacaccgacacttgtaattacactaaattat 16303297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 17274683 - 17274621
Alignment:
Q  179 gagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatatttataggtgg 241  Q
    ||||| ||||||| ||||||||| |||||||  | ||||||||||||||||||||||| ||||    
T  17274683 gagaaaagtaatgaatgaattcagtaaatggaaataatgaggggaagttatatttatatgtgg 17274621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12895214 - 12895257
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgttccgatgtc 44  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccgatgtc 12895257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 471 - 536
Target Start/End: Complemental strand, 199735 - 199669
Alignment:
Q  471 cactgaatcgattcaagatgtcttttatgccattg-aatcaaatcacaagtgtaaaagtgcataaaa 536  Q
    |||| ||| ||||||||||||| |||||| ||||  |||||| ||||||||||| ||||||||||||    
T  199735 cactaaattgattcaagatgtcctttatgacatttcaatcaattcacaagtgtagaagtgcataaaa 199669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 27706162 - 27706208
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||  |||||||||  ||||||||||||||||||||||||    
T  27706162 tgtccgacattaacacgacactcacacttgtaattacactaaattat 27706208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 6485613 - 6485642
Alignment:
Q  58 acaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||    
T  6485613 acaccgacacttgtaattacactaaattat 6485642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 30299008 - 30298975
Alignment:
Q  54 cacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  30299008 cacgacaccgacacttgtaattacactgaattat 30298975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 30327876 - 30327843
Alignment:
Q  54 cacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  30327876 cacgacaccgacacttgtaattacactgaattat 30327843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 30838283 - 30838238
Alignment:
Q  42 gtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||  ||||||||||||| |||| |||||||||||||||||    
T  30838283 gtccgacactgacacgacaccgatacttataattacactaaattat 30838238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 503 - 670
Target Start/End: Original strand, 19272773 - 19272940
Alignment:
Q  503 ttgaatcaaatcacaagtgtaaaagtgcataaaatatagtttgaaaacacattaaaactatacactttgtaatatatgatttcaatctcaaagtaggttc 602  Q
    ||||||| | |||||||||||||||||||||||| ||||||| |||||||| ||| | | |||||||||||| |||||||||| | ||||||||||||||    
T  19272773 ttgaatcgattcacaagtgtaaaagtgcataaaa-atagtttaaaaacacactaagattctacactttgtaaaatatgatttctacctcaaagtaggttc 19272871  T
Q  603 aataaca--agtttatcaaaagttttatgtgtgcaaactatatttttgcaaggtgagaataagtcctaaa 670  Q
    || ||||  ||||||  ||||||||||||  ||| || ||  ||| ||||||||||||||||||||||||    
T  19272872 aa-aacatgagtttagaaaaagttttatgcatgcgaaataagtttatgcaaggtgagaataagtcctaaa 19272940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 11272531 - 11272617
Alignment:
Q  2 tatgaagcacgaatgctcctcggattaggcgtgttccga-tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||  || ||||||||||||||||||| |||  |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  11272531 tatgaagcacagatactcctcggattaggcgtgtcccgcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattat 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 19272572 - 19272643
Alignment:
Q  283 tgaatcgattcagagaaagtgtgaatcgactaagagactaaaatgggttctgggaatcatttgaagattgaa 354  Q
    ||||||||||||  |||||||||||| || |||| |||||||||| ||| |||| |||||||||||||||||    
T  19272572 tgaatcgattcaacgaaagtgtgaattgattaagggactaaaatgtgttatgggcatcatttgaagattgaa 19272643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 2334313 - 2334278
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  2334313 gacacgacaccgacacttgtaattacactaaattat 2334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 24339716 - 24339670
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 24339670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 9408333 - 9408365
Alignment:
Q  55 acgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||||||||||||||||||||||||    
T  9408333 acgacaccgacacttgtaattacactaaattat 9408365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 18039062 - 18039027
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||| ||||||    
T  18039062 gacacgacaccgacacttgtaattacactgaattat 18039027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 27945104 - 27945069
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||| ||||||    
T  27945104 gacacgacaccgacacttgtaattacactgaattat 27945069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 21395269 - 21395339
Alignment:
Q  17 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||| ||||||||||||| | | |||||||||  ||||||||||||||||||||||||||||||||||||    
T  21395269 ctccttggattaggcgtgtcctggtgtccgacactgacacgacaccgacacttgtaattacactaaattat 21395339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 16766771 - 16766725
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 16766725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 9107355 - 9107399
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaatt 85  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||    
T  9107355 tgtccgacaccgacacgacaccgacacttgtaattacactgaatt 9107399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 9911524 - 9911559
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9911524 gacacgacaccgacacttgtaattacactgaattat 9911559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 10770670 - 10770705
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||| ||||||    
T  10770670 gacacgacaccgacacttgtaattacactgaattat 10770705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 21513309 - 21513364
Alignment:
Q  179 gagaatagtaatggatgaattcaataaatgggtacaatgaggggaagttatattta 234  Q
    ||||| ||||||| ||||| ||| | ||||||||||||||| ||||||||||||||    
T  21513309 gagaaaagtaatgaatgaaatcagttaatgggtacaatgagtggaagttatattta 21513364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 2572041 - 2572087
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  2572041 tgtccgacacagacacgacaccgacacttgtaattacactaaattat 2572087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8343086 - 8343000
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||  |  ||| ||||||||||||||| ||| |||| |||| |   |||||||||||||||||||||||||||||||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgtacgacaccgacacttgtaattacactaaattat 8343000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 20873128 - 20873097
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  20873128 cgacaccgacacttgtaattacactaaattat 20873097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 15816126 - 15816160
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||| |||||||||||||||||    
T  15816126 acacgacaccgacacttataattacactaaattat 15816160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 16867202 - 16867236
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||| |||||||||||||||||    
T  16867202 acacgacaccgacacttataattacactaaattat 16867236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 25566903 - 25566869
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||||||||||||||||||| ||||||    
T  25566903 acacgacaccgacacttgtaattacactgaattat 25566869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 1509637 - 1509567
Alignment:
Q  17 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||| |||||||||||| ||| |||| ||||  || |||||||||||||||||||||||||||||||||    
T  1509637 ctcctccgattaggcgtgtaccggtgtcggacaccgaaacgacaccgacacttgtaattacactaaattat 1509567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 34185108 - 34185152
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaatt 85  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  34185108 tgtccgacatggacacgacaccgacacttgtaattacactgaatt 34185152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 543
Target Start/End: Original strand, 15774939 - 15775009
Alignment:
Q  474 tgaatcgattcaagatgtcttttatgcca-ttgaatcaaatcacaagtgtaaaagtgcataaaatatagtt 543  Q
    ||||||||||||||||||| |||||| || ||||||| | ||| ||||||||||||||||| || ||||||    
T  15774939 tgaatcgattcaagatgtcgtttatgacatttgaatcgattcataagtgtaaaagtgcatagaaaatagtt 15775009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 14747655 - 14747590
Alignment:
Q  22 cggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||  || |||| || | ||||||||||| ||| |||||||||||||||||||||    
T  14747655 cggattaggcgtgtctcggtgtcggatacagacacgacacggacccttgtaattacactaaattat 14747590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 27505310 - 27505274
Alignment:
Q  51 agacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27505310 agacacgacaccgacacttgtaattacacttaattat 27505274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 55401134 - 55401103
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  55401134 cgacaccgacacttgtaattacactaaattat 55401103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 14209187 - 14209141
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||||    
T  14209187 tgtccgacaccgacacgacactgacacttgtaattacactgaattat 14209141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21478811 - 21478777
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgt 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  21478811 ctatgaagcacaaatgctcctcggattaggcgtgt 21478777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 34910435 - 34910345
Alignment:
Q  2 tatgaagcacgaatgctcctcggattaggcgtgttccg-----atgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||| |  ||||||||||||| ||||| |||     ||||||||||  || ||||||||||| |||||||||||||| ||||||    
T  34910435 tatgaagcacggacactcctcggattagacgtgtcccggtgtcatgtccgacaccgatacgacaccgactcttgtaattacactgaattat 34910345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 28918062 - 28918029
Alignment:
Q  54 cacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||| ||||||    
T  28918062 cacgacaccgacacttgtaattacactgaattat 28918029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 6612156 - 6612202
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  6612156 tgtccgacatcgacacgacaccgacacttgtaattacactgaattat 6612202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 87
Target Start/End: Complemental strand, 2218302 - 2218267
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||||||    
T  2218302 gacacgacaccgacacttgtaattacactaaattat 2218267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 113396 - 113327
Alignment:
Q  17 ctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||| ||| |||  ||||  ||||||||||| ||||||||||||||||| ||||||    
T  113396 ctcctcggattaggcgtgtcccggtgttggacac-gacacgacacctacacttgtaattacactgaattat 113327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 5376485 - 5376531
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||| |||||||||||||||||| |||||||||| ||||||    
T  5376485 tgtccgacatcgacacgacaccgacacttttaattacactgaattat 5376531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 47989571 - 47989525
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  47989571 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 47989525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 46940748 - 46940796
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgaca 49  Q
    ||||||||||||||  ||||||||||||||||||||||| |||| ||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggaca 46940796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 22515887 - 22515918
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  22515887 cgacaccgacacttgtaattacactaaattat 22515918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 22881616 - 22881647
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  22881616 cgacaccgacacttgtaattacactaaattat 22881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 24577182 - 24577217
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24577182 gacacgacaccgacacttgtaattacactgaattat 24577217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 41877470 - 41877501
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  41877470 cgacaccgacacttgtaattacactaaattat 41877501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 46348383 - 46348414
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  46348383 cgacaccgacacttgtaattacactaaattat 46348414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 5944357 - 5944311
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||| ||| |||||||||||||||||| |||||||||| ||||||    
T  5944357 tgtccgtcatcgacacgacaccgacacttataattacactgaattat 5944311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 9629885 - 9629931
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||| |||||||||||||||||| |||| ||||| ||||||    
T  9629885 tgtccgacatcgacacgacaccgacacttataatcacactgaattat 9629931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 15449217 - 15449263
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  || ||||||| |||||||||||||||||||||||||    
T  15449217 tgtccgacaccgatacgacacagacacttgtaattacactaaattat 15449263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 25272544 - 25272510
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||| |||||||||||||||||    
T  25272544 acacgacaccgacacttataattacactaaattat 25272510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 28273073 - 28273119
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||| || | |||||||||||||||||||||||| ||||||    
T  28273073 tgtccgacatcgataggacaccgacacttgtaattacactgaattat 28273119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 31694695 - 31694741
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||||||||||||| ||| ||||||    
T  31694695 tgtccgacaccgacacgacaccgacacttgtaattatactgaattat 31694741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38078601 - 38078635
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgt 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgt 38078635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 1704951 - 1705023
Alignment:
Q  17 ctcctcggattaggcgtgttccgatgtccgaca--tagacacgacaccgacacttgtaattacactaaattat 87  Q
    ||||| |||||||||||||  || |||| ||||  | |||||||||||||||||||||||||| || ||||||    
T  1704951 ctccttggattaggcgtgtctcggtgtcggacacgttgacacgacaccgacacttgtaattaccctgaattat 1705023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47989627 - 47989578
Alignment:
Q  1 ctatgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacat 50  Q
    |||||||||||| |  ||||||||||||||||||| |||||||| |||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacat 47989578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 21351852 - 21351936
Alignment:
Q  3 atgaagcacgaatgctcctcggattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||| |  ||| ||||||||| ||||||||  |||| ||||  |||| |||||||||||||||||||||||| ||||||    
T  21351852 atgaagcacggacactcttcggattagacgtgttccagtgtcggacaccgacatgacaccgacacttgtaattacactgaattat 21351936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 19579775 - 19579729
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  |||||||||||||||||||||||| |||||||||||    
T  19579775 tgtccgacactgacacgacaccgacacttgtaattgcactaaattat 19579729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 21542104 - 21542058
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||||||||||||||||| ||||||    
T  21542104 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat 21542058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 87
Target Start/End: Complemental strand, 33178084 - 33178053
Alignment:
Q  56 cgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||    
T  33178084 cgacaccgacacttgtaattacactaaattat 33178053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 21522824 - 21522778
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  21522824 tgtccgacaccgacacgacaccgacaattgtaattacactgaattat 21522778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 21533390 - 21533344
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  21533390 tgtccgacaccgacacgacaccgacaattgtaattacactgaattat 21533344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 39698615 - 39698569
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  |||||||||| |||||||||||||||||| ||||||    
T  39698615 tgtccgacaccgacacgacactgacacttgtaattacactgaattat 39698569  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 20539672 - 20539705
Alignment:
Q  54 cacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||||||||||||||||||||    
T  20539672 cacgacaccgacacttgtaattacactaaattat 20539705  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 14996219 - 14996254
Alignment:
Q  52 gacacgacaccgacacttgtaattacactaaattat 87  Q
    |||| |||||||||||||||||||||||||||||||    
T  14996219 gacaagacaccgacacttgtaattacactaaattat 14996254  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 30717515 - 30717561
Alignment:
Q  41 tgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  ||||||||| ||||||||||||||||||| ||||||    
T  30717515 tgtccgacaacgacacgacatcgacacttgtaattacactgaattat 30717561  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 15657937 - 15657892
Alignment:
Q  42 gtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||  |||||||||||||| ||||||||||||| ||||||    
T  15657937 gtccgacatcaacacgacaccgacatttgtaattacactgaattat 15657892  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 19235 - 19172
Alignment:
Q  24 gattaggcgtgttccgatgtccgacatagacacgacaccgacacttgtaattacactaaattat 87  Q
    |||||| ||||||||||||||||| |  ||||||||||||||| || |||| ||||| ||||||    
T  19235 gattagacgtgttccgatgtccgatactgacacgacaccgacatttttaatcacactgaattat 19172  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 25765 - 25799
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    ||||||||||||||||| |||||||||||||||||    
T  25765 acacgacaccgacacttataattacactaaattat 25799  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 23832 - 23798
Alignment:
Q  53 acacgacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||||||||||||||||||| ||||||    
T  23832 acacgacaccgacacttgtaattacactgaattat 23798  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 87
Target Start/End: Original strand, 17750 - 17780
Alignment:
Q  57 gacaccgacacttgtaattacactaaattat 87  Q
    |||||||||||||||||||||||||||||||    
T  17750 gacaccgacacttgtaattacactaaattat 17780  T

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