View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7748_low_3 (Length: 341)
Name: NF7748_low_3
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7748_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 52386339 - 52386027
Alignment:
| Q |
14 |
gacatcaaagatcaaaatggattttaaataaaacaaaaagccaggcatccaaattcaaccttggattttaggtgtaaataaatgaatatatcaaatttat |
113 |
Q |
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| T |
52386339 |
gacatcaaagatcaaaatggattttaaataaaataaaaagaca----tccaaattcaaccttggattttaggtgtaaataaatgaatatatcaaatttat |
52386244 |
T |
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| Q |
114 |
tatgaaatttcttttagagataaaaataaagtataaaagatacatctatagaaaggttccctgtgcaaatttcaactttcaaactattgaactcgctttc |
213 |
Q |
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| T |
52386243 |
tattaaatttcttttagagataaaaataaagtataaaagatacatctatagaaaggttccctgtgcaaatttcaactttcaaactattgaactcgctttc |
52386144 |
T |
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| Q |
214 |
acaaacaaaattaatcatcatgtccgtgtaaattctggtcccagatgagatacatattcatcactatacaaaattgcatagcaaaatctttacaagtaat |
313 |
Q |
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| T |
52386143 |
acaaacataattaatcatcatttccgtgtaaattctggtcccagatgagatacatattcatcacaatacaaaattgcatagcaaaatctttacaagtaat |
52386044 |
T |
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| Q |
314 |
tggtgacgacccaactc |
330 |
Q |
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| T |
52386043 |
tggtgacgacccaactc |
52386027 |
T |
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