View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7748_low_4 (Length: 338)
Name: NF7748_low_4
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7748_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 8938310 - 8937991
Alignment:
| Q |
1 |
agtattggcaatgtcattacttcctatgcaaataatgtatacactctttgatattatcatttccattctcatttctccaactgcttcctttatcttattt |
100 |
Q |
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| T |
8938310 |
agtattggcaatgtcattacttcctatgcaaataatgtatacactctttgatattatcatttccattctcatttctccaactgcttcctttatcttattt |
8938211 |
T |
|
| Q |
101 |
ttgtactccttgaacatgttcaattgatctgataatgatatcacagacttacaacaataaaagaattatagttagtttaaatatatgctatgcatgtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8938210 |
ttgtactccttgaacatgttcaattgatctgacaatgatatcacagacttacaacaataaaagaattatagttagtttaaatatatgctatgcatgtaat |
8938111 |
T |
|
| Q |
201 |
taaaga-ttcaaattcagtgttggacatagttattatttactgctgatttagaagttagaggatcatatcctgcaccaccagaagcaaagcttacacctg |
299 |
Q |
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| T |
8938110 |
taaagatttcaaattcagtgttagacatagttattatttactgctgatttagaagttagaggatcatatcctgcaccaccagaagcaaagcttacacctg |
8938011 |
T |
|
| Q |
300 |
ttagaagatcttgaagttgc |
319 |
Q |
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|||||||||||||||||||| |
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| T |
8938010 |
ttagaagatcttgaagttgc |
8937991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 8946668 - 8946358
Alignment:
| Q |
1 |
agtattggcaatgtcattacttcctatgcaaataatgtatacactctttgatattatcatttccattctcatttctccaactgcttcctttatcttattt |
100 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946668 |
agtattggcaatgtcatcagcccctatgcaaataatgtatacactctttgatattatcatttccattctcatttctccaactgcttcctttatcttattc |
8946569 |
T |
|
| Q |
101 |
ttgtactccttgaacatgttcaattgatctgataatgatatcacagacttacaacaataaaag--aattatagttagtttaaatatatgctatgcatgta |
198 |
Q |
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| T |
8946568 |
ttgtactccttgaacatgttcaattgatctgataatgataacactaacttaaaacaa-aaaagtaaattatagttagttttaaca-----tatgcatgca |
8946475 |
T |
|
| Q |
199 |
attaaagattcaaattcagtgttggacatagttattatttactgctgatttagaagttagaggatcatatcctgcaccaccagaagcaaagcttacacct |
298 |
Q |
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||| || ||||||| ||||| || ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8946474 |
attgaaaattcaaactcagtattagacatag---ttatttactgctaattgagaagttagaggatcatatcctgcaccaccagaggcaaagcttacacct |
8946378 |
T |
|
| Q |
299 |
gttagaagatcttgaagttg |
318 |
Q |
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|||| ||||||| |||||| |
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| T |
8946377 |
gttaagagatcttcaagttg |
8946358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 31796728 - 31796872
Alignment:
| Q |
1 |
agtattggcaatgtcattacttcctatgcaaataatgtatacactctttgatattatcatttccattctcatttct-ccaactgcttcctttatcttatt |
99 |
Q |
| |
|
|||||| |||||||||| |||||||||||| | ||||||| |||||||||| ||||| | || || || | ||| |||| |||||| | |||||| || |
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| T |
31796728 |
agtattagcaatgtcatcacttcctatgcacactatgtatatgctctttgatactatcaatgccctt-tcctctcttccaattgcttcatctatcttctt |
31796826 |
T |
|
| Q |
100 |
tttgtactccttgaacatgttcaattgatctgataatgatatcaca |
145 |
Q |
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|||| |||||||||||| ||||||||||||||||||| ||||| |
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| T |
31796827 |
catgtatcccttgaacatgtccaattgatctgataatgatttcaca |
31796872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 31797274 - 31797338
Alignment:
| Q |
254 |
gttagaggatcatatcctgcaccaccagaagcaaagcttacacctgttagaagatcttgaagttg |
318 |
Q |
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||||||||||||||||| | |||||| || |||||||||||||| || || ||||| ||||||| |
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| T |
31797274 |
gttagaggatcatatccagaaccacctgaggcaaagcttacaccagtaaggagatcaggaagttg |
31797338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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