View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7748_low_5 (Length: 302)
Name: NF7748_low_5
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7748_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 9046425 - 9046162
Alignment:
| Q |
16 |
atctacattaaaccctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacgtaatgctagcagagtaaca |
115 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | | || |||| ||||||| |
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| T |
9046425 |
atctaaattaaaccctgctcaagtgcttaagttactaaatagaaaactaaaactgattgtaataaagtatatcatgtcacatgacgccagcaaagtaaca |
9046326 |
T |
|
| Q |
116 |
aagcctttccaaaattacatacactattagcaaatatcaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatg |
215 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9046325 |
aagcctttccaaaattacatacaccgttagcaaataacaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtg |
9046226 |
T |
|
| Q |
216 |
cctgcaaccccttttatcataattatcatttgcaaaactaagattgctactgaattataactgg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9046225 |
cctgcaaccccttttatcataattatcatttgcaaaactaagattgctactgaattatcactgg |
9046162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 42938570 - 42938437
Alignment:
| Q |
16 |
atctacattaaaccctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacgtaatgctagcagagtaaca |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
42938570 |
atctacattaaaccctgctaaagtgcttaagttactaaatagaaaactaaaactcattgtaataaagtatataatgtcacataatgctagcaaagtaaca |
42938471 |
T |
|
| Q |
116 |
aagcctttccaaaattacatacactattagcaaa |
149 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42938470 |
aagcctttccaaaattacatacactattagcaaa |
42938437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 42936791 - 42936669
Alignment:
| Q |
157 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaa |
256 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42936791 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttggaaaactaa |
42936692 |
T |
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| Q |
257 |
gattgctactgaattataactgg |
279 |
Q |
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||||||||||||||||| ||||| |
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| T |
42936691 |
gattgctactgaattatcactgg |
42936669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 26084700 - 26084618
Alignment:
| Q |
191 |
gaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaagattgctactgaattat |
273 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26084700 |
gaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttgcaaaactaagattgctaccgaattat |
26084618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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