View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7748_low_6 (Length: 285)
Name: NF7748_low_6
Description: NF7748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7748_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 45103778 - 45104030
Alignment:
| Q |
11 |
agaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaag |
110 |
Q |
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| T |
45103778 |
agaatatgcaagggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttacatattctggaag |
45103877 |
T |
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| Q |
111 |
cagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctct |
210 |
Q |
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| T |
45103878 |
cagtttatcatcttctagtgagatggacggttcagatagctcggggaaaaaacttcatcttttatcaacaccatccactccaaggacattcattctctct |
45103977 |
T |
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| Q |
211 |
tttgataaatctaccataataccagctactactacaccagaatcagaagaagt |
263 |
Q |
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| T |
45103978 |
tttgataaatctaccataataccagctactactacaccagaatcagaagaagt |
45104030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 45130417 - 45130659
Alignment:
| Q |
21 |
agggcaatattgtcatcaaacaagtactgatgatgaagaagagttcttgagagacataattcttcagcaacctgttgcatattctggaagcagtttatca |
120 |
Q |
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| T |
45130417 |
agggcaatattgtcatcaaactagtgctgatgatgaagaagagttcttgagagacataatccttcagcaacctgttacatattctggaagta---tatca |
45130513 |
T |
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| Q |
121 |
tcttctagtgagatggacggttcagatagctcggggaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaat |
220 |
Q |
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| T |
45130514 |
tcctctaatgagatggatggctcagattgctcaaagaaaaagcttcatccttcatcatcaccgttcactccaaggacattcattctctcttttgataaat |
45130613 |
T |
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| Q |
221 |
ctaccataataccagctactactacaccagaatcagaagaagtgtc |
266 |
Q |
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| T |
45130614 |
ctaccataataccagctactactacaccagaatcagaagaagtgtc |
45130659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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