View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_high_2 (Length: 250)
Name: NF7749_high_2
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_high_2 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 7951 - 8183
Alignment:
| Q |
2 |
tatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctcaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7951 |
tatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctcaa |
8050 |
T |
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| Q |
102 |
aactattcacaccacaatgcaagataccacgaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaagagatcctaaa |
201 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8051 |
aactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaaa |
8150 |
T |
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| Q |
202 |
cataact-aaatatttatgtacagttgacttct |
233 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
8151 |
cataactaaaatatttatgtacagttgacttct |
8183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 19814116 - 19814348
Alignment:
| Q |
2 |
tatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctcaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19814116 |
tatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctcaa |
19814215 |
T |
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| Q |
102 |
aactattcacaccacaatgcaagataccacgaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaagagatcctaaa |
201 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19814216 |
aactattcacaccacaatgcaagataccacaaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaaa |
19814315 |
T |
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| Q |
202 |
cataact-aaatatttatgtacagttgacttct |
233 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
19814316 |
cataactaaaatatttatgtacagttgacttct |
19814348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 1203038 - 1203269
Alignment:
| Q |
2 |
tatatgaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctcaa |
101 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1203038 |
tatataaaggacaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacttcaa |
1203137 |
T |
|
| Q |
102 |
aactattcacaccacaatgcaagataccacgaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaagagatcctaaa |
201 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1203138 |
aactattcacaccacaatgcaagataccacaaatttaatttcagtaatggttcctacctctacaatttcatgtataaaaattagtcaaatagatcctaaa |
1203237 |
T |
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| Q |
202 |
cataactaaatatttatgtacagttgacttct |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1203238 |
cataactaaatatttatgtacagttgacttct |
1203269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 42863089 - 42862898
Alignment:
| Q |
12 |
acaatgtgcaatcacaaaagggatagacaaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacctcaaaactattcac |
111 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42863089 |
acaatgtgcaatcacaaaagggatagaccaatgtatcaaacaaacataaataggactttatatcttaatataaagcagtccacacatcaaaactattcac |
42862990 |
T |
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| Q |
112 |
accacaatgcaagataccacgaatttaattccagtaatggttcctacctctacaatttcatgtataaaaattagtcaaagagatcctaaaca |
203 |
Q |
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|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
42862989 |
accacaatgcaacataccacaaatttaactccagtaatggttcctacctctacaatttcatgtataaaaattaatcaaatagatcctaaaca |
42862898 |
T |
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