View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_low_11 (Length: 302)
Name: NF7749_low_11
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 47014131 - 47013876
Alignment:
| Q |
6 |
gtcgaagaatataacagaccttcaaaggagctgatttgtgccaaatagagtttgatgcaataggggtaagtggtaactccgcagttgttagcatatgata |
105 |
Q |
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| T |
47014131 |
gtcgaacaataaaacagaccttcaaaggagctgatttgtgccaaatagagtttgatgcaataggggtaagtggtaactccgcagttgttagcatatgata |
47014032 |
T |
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| Q |
106 |
aactatttgaataagttttggatggatccaaaagccattgtcatcggtccgcctcttcgacctgcaaaacaatacgccgaagcaatgtgcaacactttcc |
205 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47014031 |
aactgtttgaataagttttggatggatccaaaagccattgtcatcggtccgcctcttcgacctgcaaaacaatacgccgaagcaatgtgcaacactttcc |
47013932 |
T |
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| Q |
206 |
gaccatctcttctcactatgcaaacaacctccttcgccactctcatgtctccccac |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47013931 |
gaccatctcttctcactatgcaaacaacctccttcgccactctcatgtctccccac |
47013876 |
T |
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