View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_low_12 (Length: 299)
Name: NF7749_low_12
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5572675 - 5572382
Alignment:
| Q |
1 |
ttctctgctgattctaaattcatatttataaacactacattagagtcagatgcccagtcagatggtaatcattttagcttacttaagtttcaattcacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572675 |
ttctctgctgattctaaattcatatttataaacactacattagagtcagatgcccagtcagatggtaatcattttagcttacttaagtttcaattcacat |
5572576 |
T |
|
| Q |
101 |
actataattaactacagtttaatgtgaatgatcgaggtttatacaatatataatcatgctgcatgttcaatgaatctcaggttttttggtttcaaatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5572575 |
actataattaactacagtttaatgtgaatgatcgaggtttatacaatatataatcatgctgcatgttcaatgaatctcaggttttttggtttcaaatgct |
5572476 |
T |
|
| Q |
201 |
ccttgttgtccatcaaggttgaatggattgtgtattcctgatgaaaggccatgctataataggagtgactatgtgttttgggatgatgtccatc |
294 |
Q |
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| T |
5572475 |
ccttgttgtccatcaaggttgaatggattgtgtattcctgatgaaaggccatgctataataggagtgactatgtgttttgggatgaagtccatc |
5572382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5592354 - 5592055
Alignment:
| Q |
1 |
ttctctgctgattctaaattcatatttataaacactacattagagtcagatgcccag---tcagatggtaatcattttagcttactt-aagtttcaattc |
96 |
Q |
| |
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|||||||||||||| |||||||| || ||||||| ||||||| ||||| |||| || ||| |||||||| ||||||| |||||| || |||||||| |
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| T |
5592354 |
ttctctgctgattccaaattcatcttaataaacaatacattacagtcaactgccgagcattcatatggtaataattttagtttacttcaattttcaattt |
5592255 |
T |
|
| Q |
97 |
acatactata--attaactacagtttaatgtgaatgatcgaggtttatacaatatataatcatgctgcatgttcaatgaatctcaggttttttggtttca |
194 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
5592254 |
acatactatataattaactacagtttaatgtgaatgatcgaggtttatacaatgcataatcaagctgcatgttcaatgaatctcaggtttttcggtttca |
5592155 |
T |
|
| Q |
195 |
aatgctccttgttgtccatcaaggttgaatggattgtgtattcctgatgaaaggccatgctataataggagtgactatgtgttttgggatgatgtccatc |
294 |
Q |
| |
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| ||||||||||||||| ||| | |||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||| ||||||| |
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| T |
5592154 |
atggctccttgttgtccaataagcgcggttggattgtgtattcgtgatgaaaggccatgctctaataggagggagtatgtgttttgggatgcagtccatc |
5592055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5575611 - 5575327
Alignment:
| Q |
1 |
ttctctgctgattctaaattcatatttataaacactacattagagtcagatgcccag---tcagatggtaatcattttagcttacttaagtttcaattca |
97 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||| |
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| T |
5575611 |
ttctccgctgattccaaattcatatttgtaaacactacgttagagtcagatgcccagaattcagatggtaataattttagtttacttaaatttcaattca |
5575512 |
T |
|
| Q |
98 |
catactataattaactacagtttaatgtgaatgatcgaggtttatacaatatataatcatgctgcatgttcaatgaatctcaggttttttggtttcaaat |
197 |
Q |
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||||||||||||| | || |||||||||| |||| || ||||||||||||||||| |||||| ||||||| ||| | ||||| ||||||||||||||| |
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| T |
5575511 |
tatactataattaattgcaatttaatgtgattgattgaagtttatacaatatataaacatgctacatgttccatggctttcagggtttttggtttcaaat |
5575412 |
T |
|
| Q |
198 |
gctccttgttgtccatcaaggttgaatggattgtgtattcctgatgaaaggccatgctataataggagtgactatgtgttttgggatgatgtccatc |
294 |
Q |
| |
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| ||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
5575411 |
gttccttgttgcccatcagg------------gtgtattcctgatgaaaggccatgctataataggagtgagtatgcgttttgggatgaagtccatc |
5575327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 113 - 285
Target Start/End: Complemental strand, 5580247 - 5580072
Alignment:
| Q |
113 |
tacagtttaatgtgaatgatcgaggttt-atacaatatata--atcatgctgcatgttcaatgaatctcaggttttttggtttcaaatgctccttgttgt |
209 |
Q |
| |
|
|||| |||||||||| |||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
5580247 |
tacattttaatgtgattgatcgaggttttatacaatatatataaccatgctgcttgttcaatgaatctcaggttttttggtttaaaatgcttcttgttgt |
5580148 |
T |
|
| Q |
210 |
ccatcaaggttgaatggattgtgtattcctgatgaaaggccatgctataataggagtgactatgtgttttgggatg |
285 |
Q |
| |
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|||||||||||| ||||| |||| |||| |||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
5580147 |
ccatcaaggttggatggactgtgcattcgtgatgaaaggccatgctataataggagtgaatatgtgtcttgggatg |
5580072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 146 - 294
Target Start/End: Complemental strand, 5581952 - 5581804
Alignment:
| Q |
146 |
atatataatcatgctgcatgttcaatgaatctcaggttttttggtttcaaatgctccttgttgtccatcaaggttgaatggattgtgtattcctgatgaa |
245 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||| | ||||||| |||| |||| | || ||||| |
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| T |
5581952 |
atatataaccatgctgaatgttaaatgaatctcagggtttttggtttcaaacgctccttgttgtccaccgaggttgattggaaggtgttatgctaatgaa |
5581853 |
T |
|
| Q |
246 |
aggccatgctataataggagtgactatgtgttttgggatgatgtccatc |
294 |
Q |
| |
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||||||||||||||||||||||| ||| | ||||||||||| ||||||| |
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| T |
5581852 |
aggccatgctataataggagtgattattttttttgggatgaagtccatc |
5581804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 5585946 - 5585837
Alignment:
| Q |
177 |
tcaggttttttggtttcaaatgctccttgttgtccatcaaggttgaatggattgtgtattcctgatgaaaggccatgctataataggagtgactatgtgt |
276 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||| | || ||||||| |
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| T |
5585946 |
tcaggttttttggttgcaaatgctccttgttgcaaaacaaggttgattggagggtgtattcctgatgaaaggccatgctataataggggagagtatgtgt |
5585847 |
T |
|
| Q |
277 |
tttgggatga |
286 |
Q |
| |
|
|||||||||| |
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|
| T |
5585846 |
tttgggatga |
5585837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5580494 - 5580392
Alignment:
| Q |
1 |
ttctctgctgattctaaattcatatttataaacactacattagagtcagatgcccagtcagatggtaatcattttagcttacttaagtttcaattcacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
5580494 |
ttctctgctgattctaaattcatatttataaactttacattagagtcagatg------------gtaattattttagcttacttaaatttcaattcacat |
5580407 |
T |
|
| Q |
101 |
actataattaactac |
115 |
Q |
| |
|
||||||||||||||| |
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| T |
5580406 |
actataattaactac |
5580392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5586085 - 5585970
Alignment:
| Q |
1 |
ttctctgctgattctaaattcatatttataaacactacattagagtcagatgcccag---tcagatggtaatcat--tttagcttacttaagtttcaatt |
95 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| ||||||||| |||| ||| |||||||| || | ||| |||||||| ||||||| |
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|
| T |
5586085 |
ttctctgctgattccaaattcatatttataaacagtacatccgagtcagatagccagaattcaaatggtaataattgtctagtttacttaaacttcaatt |
5585986 |
T |
|
| Q |
96 |
cacatactataattaa |
111 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
5585985 |
catatactataattaa |
5585970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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