View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_low_18 (Length: 228)
Name: NF7749_low_18
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_low_18 |
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| [»] scaffold0360 (2 HSPs) |
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Alignment Details
Target: scaffold0360 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: scaffold0360
Description:
Target: scaffold0360; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 16135 - 15940
Alignment:
| Q |
1 |
ggaattccaaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaatgatgaacaaacttacaagcaatttcccttgatatatact |
100 |
Q |
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| T |
16135 |
ggaattccaaagcacaaacgaaaatttagtgcatgattgtct----tatttcattttaaatgatgaacaaacttacaagcaatttcctttgatatatact |
16040 |
T |
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| Q |
101 |
aaaaccattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttctaatcgaaagaagaagat |
200 |
Q |
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| T |
16039 |
aaaaccattgtcatattaacgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttctaatcgaaagaagaagat |
15940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0360; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 15898 - 15852
Alignment:
| Q |
153 |
tttgaaagggatagttggtagttaaagttctaatcgaaagaagaaga |
199 |
Q |
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| T |
15898 |
tttgaaagggatagttgctagttaaagttcgaatagatagaagaaga |
15852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5861879 - 5861686
Alignment:
| Q |
1 |
ggaattccaaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaatgatgaacaaacttacaagcaatttcccttgatatatact |
100 |
Q |
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| T |
5861879 |
ggaattctaaagcacaaacgaaaatttagtccatgattgtat----tatttcattttaaatgatgaacaaacttacaagcaatttcccttgatata--ct |
5861786 |
T |
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| Q |
101 |
aaaaccattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttctaatcgaaagaagaagat |
200 |
Q |
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| T |
5861785 |
aaaaccattgtcatattaacgtcaattataaagttgcaccattttttcttgttttgaaagggatagttggtagttaaagttctaatcgaaagaagaagat |
5861686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 5891579 - 5891765
Alignment:
| Q |
9 |
aaagcacaaacgaaaatttagtgcatgattgtctgtcttatttcattttaaa-tgatgaacaaacttacaa-gcaattt-cccttgatatatactaaaac |
105 |
Q |
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| T |
5891579 |
aaagcacaaacgaaaatttagtgcatgattgtct----tatttcatttaaaaatgattaacaaacttacaaagcaaattgcccttgatat--actaaaac |
5891672 |
T |
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| Q |
106 |
cattgtcatattagcgtcaattataaagttgcaccattttttcttgctttgaaagggatagttggtagttaaagttctaatcgaaagaagaaga |
199 |
Q |
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| T |
5891673 |
cattgtcatattaacgtcaattataaagttg-tcgatctttttattttctgaaagggatagttgctagttaaagttcaaatcgaaagaagaaga |
5891765 |
T |
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