View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_low_5 (Length: 469)
Name: NF7749_low_5
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 35891177 - 35891616
Alignment:
| Q |
18 |
aataaagacagagttgaaatctgttggaggaactaatgctactgctgctcctgctccaaatgctaattcaggttctggaaatcagttagtagaaagacaa |
117 |
Q |
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| T |
35891177 |
aataaagacagagttgagatctgttggaggaactaatgctactgctgctcctgctccaaatgctaattcaggttctggaaatcagttagtagaaagacaa |
35891276 |
T |
|
| Q |
118 |
acgcagaaatcagttggagtatctactgttgctgctgctccaaatgttaagtcagatttagaaaaggatgtcaaagaattagacgcttctggaaagttag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35891277 |
acgcagaaatcagttggagtatctactgttgctgctgctccaaatgttaagtcagatttagaaaaggatgtcaaagaattagacgcttctggaaagttag |
35891376 |
T |
|
| Q |
218 |
tagaaagacaaacgagtcacctttctccaacaactctgccagtatcagatggacgcttaattcccacaacaactagtactgcaaatcatgaggacttgaa |
317 |
Q |
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| T |
35891377 |
tagaaagacaaacgagtcacctttctccaacaactccgccagtgtcagatggacgcttaattcccacaacaactagtactgcaaatcatgaggacttgaa |
35891476 |
T |
|
| Q |
318 |
gtctccttctgtagaggagacttgaaattaagtgtctaattttgtagaaaaccaaaaacttcttgattagttttggtgcatatgttgtatatagaatcat |
417 |
Q |
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| T |
35891477 |
gtctccttctgtagaggagacttgaaattaagtgtctaattttgtagaaaaccaaaaacttcttgattagttttggtgcatatgttgtatatagaatcat |
35891576 |
T |
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| Q |
418 |
gatatgatattccaagaaaccataattgtttccttttctt |
457 |
Q |
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| T |
35891577 |
gatatgatattccaagaaaacataattgtttccttttctt |
35891616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 35919891 - 35919967
Alignment:
| Q |
284 |
caacaactagtactgcaaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaatttt |
360 |
Q |
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| T |
35919891 |
caacaactagtacggcaaataatcaggacatgaagtctccttctgtagaagacatttgaaattaagtgtctaatttt |
35919967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 35556088 - 35556012
Alignment:
| Q |
283 |
acaacaactagtactgcaaatcatgaggacttgaagtctccttctgtagaggagacttgaaattaagtgtctaatttt |
360 |
Q |
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| T |
35556088 |
acaaccactagtactgcgaatgatcaggacatgaagtctcctt-tgtagaagacacttgaaattaagtgtctaatttt |
35556012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 457
Target Start/End: Original strand, 21445744 - 21445875
Alignment:
| Q |
323 |
cttctgtagaggagacttgaaattaagtgtctaattttgtagaaaaccaaaaacttcttgattagttttggtgcatatgttgtatatagaatcatgatat |
422 |
Q |
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|||||| |||| | || ||||||||||||||||||||| || || | ||||| |||||||||| ||||||| ||| ||| | || ||| |||||| || |
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| T |
21445744 |
cttctggagagaacacgtgaaattaagtgtctaattttctataa--ctaaaaagttcttgattaactttggtgtataggttttgtaaagactcatgaaat |
21445841 |
T |
|
| Q |
423 |
gatattccaagaaaccataattgtttccttttctt |
457 |
Q |
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| T |
21445842 |
gatattccaa-aaaccataattgtttccttttctt |
21445875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 308 - 457
Target Start/End: Original strand, 29624270 - 29624419
Alignment:
| Q |
308 |
aggacttgaagtctccttctgtagaggagacttgaaatt-aagtgtctaattttgtagaaaaccaaaaacttcttgattagttttggtgcatatgttgta |
406 |
Q |
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||||| |||||||||||||||||||||| ||||||| || |||||||||| | |||||| || | ||||| |||| || | ||| ||| |||||| |
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| T |
29624270 |
aggacatgaagtctccttctgtagaggacacttgaaggacaaatgtctaatttcctgtaaaaccgaagagttcttcattaattctagtgtataggttgta |
29624369 |
T |
|
| Q |
407 |
tatagaatcatgatatgatattccaagaaaccataattgtttccttttctt |
457 |
Q |
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|||||| |||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
29624370 |
tatagactcatgaaatgatattccaa-aaaccgtaattgtttccttttctt |
29624419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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