View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_low_6 (Length: 456)
Name: NF7749_low_6
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_low_6 |
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| [»] scaffold0249 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 36615061 - 36614622
Alignment:
| Q |
1 |
cacaaacaaggaatggttttccctaaagatgaccttgatatcacgacagataattttagacactaaaggacacctaaaacccaggcagttcggtacatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36615061 |
cacaaacaaggaatggttttccctaaagatgaccttgatatcacgacagataattttagacactaaaggacacctaaaacccaggcagttcggtacatat |
36614962 |
T |
|
| Q |
101 |
gaggacttgctgataaacgacgaagtacattaattaacccttcatttagtgcatggctagattttatcgagtttatccgccttaattactgggttggatt |
200 |
Q |
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| T |
36614961 |
gaggacttgctgataaacgacgaagtacattaattaacccttcgtttagtgcatggctagattttatcgagtttatccgccttaattactgggttggatt |
36614862 |
T |
|
| Q |
201 |
cagctatggccttctgaccagcagttctataatcaaaagggcaatcgtgtttatcagaatagcgatgcattgagcaaaagaggttgccacatttgcagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36614861 |
cagctatggccttctgaccagcagttctataatcaaaagggcaatcgtgtttatcagaatagcgatgcattgagcaaaagaggttgccacatttgcagct |
36614762 |
T |
|
| Q |
301 |
gaaaccggttaatccaacacgtttccggcaagtagcgcatctgctgggaccagtcttggctttcatctccacactctcgttagagattggattttctgga |
400 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36614761 |
gaagccagttaatccaacacgtttccggcaagtagcgcatctgctgggaccagtcttggctttcatctccacactctcattagagattggattttctgga |
36614662 |
T |
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| Q |
401 |
acctcgggagacactgtattgagctccacactttcaactc |
440 |
Q |
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| T |
36614661 |
acctcgggagacactgtattgagctccacactttcaactc |
36614622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 228 - 440
Target Start/End: Complemental strand, 7831256 - 7831048
Alignment:
| Q |
228 |
tataatcaaaagggcaatcgtgtttatcagaatagcgatgcattgagcaaaagaggttgccacatttgcagctgaaaccggttaatccaacacgtttccg |
327 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||| || |
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| T |
7831256 |
tataattaaaagggcaatcatgtttatcagaatagcgatgcattgaacaaaagaggttgccgcatttgcagctgaaaccagttaagtcaacacgttttcg |
7831157 |
T |
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| Q |
328 |
gcaagtagcgcatctgctgggaccagtcttggctttcatctccacactctcgttagagattggattttctggaacctcgggagacactgtattgagctcc |
427 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7831156 |
gcaagtaatgcatctgctgggaccagtcttggcattcatctccacact----ttagagattggattttctggaacctcaaaagacactgtattgagctcc |
7831061 |
T |
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| Q |
428 |
acactttcaactc |
440 |
Q |
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||||||||||||| |
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| T |
7831060 |
acactttcaactc |
7831048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 148 - 363
Target Start/End: Complemental strand, 22906 - 22691
Alignment:
| Q |
148 |
agtgcatggctagattttatcgagtttatccgccttaattactgggttggattcagctatggccttctgaccagcagttctataatcaaaagggcaatcg |
247 |
Q |
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||||||| ||||| ||| ||||| || || ||||||||||| |||||||||| ||| || || | | | ||| ||| | |||||||| |||||||| |
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| T |
22906 |
agtgcatccctagaatttgtcgagcttgtcggccttaattacagggttggatttagcaatagcatcccggccaacagattggtaatcaaacgggcaatca |
22807 |
T |
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| Q |
248 |
tgtttatcagaatagcgatgcattgagcaaaagaggttgccacatttgcagctgaaaccggttaatccaacacgtttccggcaagtagcgcatctgctgg |
347 |
Q |
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|| || ||||||||||| ||||||| ||||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||| | |
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| T |
22806 |
tgcttgtcagaatagcggtgcattgcacaaaaaaggtttccacatttgcaggtgaaacctgttaatccaacacgcttccggcaagtagcacatctgcttg |
22707 |
T |
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| Q |
348 |
gaccagtcttggcttt |
363 |
Q |
| |
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|||| |||||| |||| |
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| T |
22706 |
gacctgtcttgacttt |
22691 |
T |
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