View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7749_low_9 (Length: 357)
Name: NF7749_low_9
Description: NF7749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7749_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 341
Target Start/End: Complemental strand, 13848764 - 13848430
Alignment:
| Q |
7 |
tcgaagaatatcaaacttcgggatttgtttgaaaagtgtagactgaagtttagctataataaacatgagaattaaaagtcttagattctctatttttgtg |
106 |
Q |
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| T |
13848764 |
tcgaagtatatcaaacttcgggatttgtttgaaaagtgtagactgaagtttagctataataaacatgagaattaaaagtcttagattctctatttttgtg |
13848665 |
T |
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| Q |
107 |
tccttattacattctatatgatcactttcataaggactgacatggtatctacatacgacatttttgcaggatcgggataatatcagcagcatggcttatt |
206 |
Q |
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| T |
13848664 |
tccttattacattctatatgatcactttcataaggactgacatggtatctacatacgacatttttgcaggatcgggataatatcagcagcatggcttatt |
13848565 |
T |
|
| Q |
207 |
ggttatccaatacatctgctttgtttttccatcttcaacgatgtctaagagcaccagcgcgaaaaccaccaactccaacagggttttttgggaggatggc |
306 |
Q |
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| T |
13848564 |
ggttatccaatacatctgctttgtttttccatcttcaacgatgtctaagagcaccagcgcgaaaaccaccaactccaacagggttttttgggaggatggc |
13848465 |
T |
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| Q |
307 |
tcaggtgctaaatttaattatacctatctaattta |
341 |
Q |
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| T |
13848464 |
tcaggtgctaaatttaattatacctatctaattta |
13848430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 89 - 341
Target Start/End: Complemental strand, 13840272 - 13840020
Alignment:
| Q |
89 |
agattctctatttttgtgtccttattacattctatatgatcactttcataaggactgacatggtatctacatacgacatttttgcaggatcgggataata |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
13840272 |
agattctctatttttgtgtccttattacattctatatgattactttcataaggcctgacatggtatccacatatgacatttttgcaggatcaggataata |
13840173 |
T |
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| Q |
189 |
tcagcagcatggcttattggttatccaatacatctgctttgtttttccatcttcaacgatgtctaagagcaccagcgcgaaaaccaccaactccaacagg |
288 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||| |||||||| ||||||||||||||| |
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| T |
13840172 |
tcagcagcatggcttattggttgtccaatacatctgctttgtttttccaccttcaacggtgtctaagagtaccagagcgaaaactaccaactccaacagg |
13840073 |
T |
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| Q |
289 |
gttttttgggaggatggctcaggtgctaaatttaattatacctatctaattta |
341 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13840072 |
tttttttgggaggatggctcaggtgctaagtttaattatacctatctaattta |
13840020 |
T |
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