View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7750_high_10 (Length: 486)
Name: NF7750_high_10
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 471
Target Start/End: Complemental strand, 50713367 - 50712909
Alignment:
| Q |
13 |
ataaagaaccagctgaattgaagattcaccaatgaaatagcacgatgcatagccttttcatcattgcacctaatcataagttgatccccttcatattcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50713367 |
ataaagaaccagctgaattgaagattcaccaatgaaatagcacgatgcatagccttttcatcattgcacctaatcataagttgatccccttcatattcca |
50713268 |
T |
|
| Q |
113 |
agaagcaacctttgggttgataaccaggtctagaaagcactaaacccatgaacataatgaacaaaccttggaagatcatgctaacagaacgaagaaaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50713267 |
agaagcaacctttgggttgataaccaggtctagaaagcactaaacccatgaacataatgaacaaaccttggaagatcatgctaacagaacgaagaaaaca |
50713168 |
T |
|
| Q |
213 |
taccaaaaaactctttggaaaaccaattcccataagggttgtaacaaaacctatcataatcaaaacttgcaaacaataatggtattgtccttctatcccc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50713167 |
taccaaaaaactctttggaaaaccaattcccataagggttgtaaaaaaacctatcataatcaaaacttgcaaacaataatggtattgtccttctatcccc |
50713068 |
T |
|
| Q |
313 |
atgtgacttcttgaatgaagatggaaaagaagaaattcttgtccaaatgctatagctgctagcaaaagggtaatttcatattgagttttttcagtaatag |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50713067 |
atgtgacttcttgaatgaagatggaaaagaagaaattcttgtccaaatgctatagctgctagcaaaagggtaatttcatattgagttttttcagtaatag |
50712968 |
T |
|
| Q |
413 |
ttgannnnnnngtatcaagaattatggcaaaggtagcatatattaagaaagacaaagtt |
471 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50712967 |
ttgatttttttgtatcaagaattatggcaaaggtagcatatattaagaaagacaaagtt |
50712909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 16 - 469
Target Start/End: Complemental strand, 50718645 - 50718198
Alignment:
| Q |
16 |
aagaaccagctgaattgaagattcaccaatgaaatagcacgatgcatagccttttcatcattgcacctaatcataagttgatccccttcatattccaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||| ||| | | |||||| || ||| || | | |
|
|
| T |
50718645 |
aagaaccagctgaattgaagattcaccaatgaaacagcacgatgaagagccttttcatcactgcacttaacaacatattgatctccctcaagtttcgtaa |
50718546 |
T |
|
| Q |
116 |
agcaacctttgggttgataaccaggtctagaaagcactaaacccatgaacataatgaacaaaccttggaagatcatgctaacagaacgaagaaaacatac |
215 |
Q |
| |
|
|||||||||| |||| | |||||||| || |||||| | ||||||||||||| |||||||||||||| | ||||||||||| || | ||||| || |
|
|
| T |
50718545 |
agcaacctttcggttcaaaaccaggtgtaaaaagcatgagccccatgaacataagccacaaaccttggaaggttatgctaacagatcgcacaaaactcac |
50718446 |
T |
|
| Q |
216 |
caaaaaactctttggaaaaccaattcccataagggttgtaacaaaacctatcataatcaaaacttgcaaacaataatggtattgtccttctatccccatg |
315 |
Q |
| |
|
||| || ||| ||||| |||||||||||||||||||||| ||||||| ||| |||||||||||| | ||||||| |||||||||||||| |||||| |
|
|
| T |
50718445 |
caagaagctcattggataaccaattcccataagggttgtcacaaaacaaatcgaaatcaaaacttgtagtaaataatgatattgtccttctatacccatg |
50718346 |
T |
|
| Q |
316 |
tgacttcttgaatgaagatggaaaagaagaaattcttgtccaaatgctatagctgctagcaaaagggtaatttcatattgagttttttcagtaatagttg |
415 |
Q |
| |
|
||| |||||||| ||||| | ||||||||||| |||| |||||||||| |||||||||||| |||||||||||| |||| |||| |||| | |||| |
|
|
| T |
50718345 |
tgatcccttgaatggagatgaataagaagaaattgttgtgcaaatgctattgctgctagcaaatgggtaatttcattttgactttt---agtacttgttg |
50718249 |
T |
|
| Q |
416 |
annnnnnngtatcaagaattatggcaaaggtagcatatattaagaaagacaaag |
469 |
Q |
| |
|
| |||||||||| |||||||| |||||||| | |||||||||||||| |
|
|
| T |
50718248 |
attttc---tatcaagaatcatggcaaatgtagcatagactaagaaagacaaag |
50718198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University