View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_high_2 (Length: 675)
Name: NF7750_high_2
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_high_2 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 656
Target Start/End: Complemental strand, 26610393 - 26609747
Alignment:
| Q |
8 |
tgtcgaataatatattcaccgtgaagacaaacaaacatttaatttttgttaacctacttcaaaaatgtattatatacaaatcaaactcgggtctctacat |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26610393 |
tgtccaataatatattcaccgtgaagacaaacaaacacttaatttttgttaacctacttcaaaaatgtattatatacaaatcaaactcgggtctctacat |
26610294 |
T |
|
| Q |
108 |
aaatccacataaccggtacaaccattggtttaaattatagtctacaactgtactatttcccttnnnnnnnntgtactattgaagattttgaggtctccaa |
207 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26610293 |
aaatccacataaccggtacaaccattgttttaaattacagtctacaactgtactatttcccttaaaaaaa-tgtactattgaagattttgaggtctccaa |
26610195 |
T |
|
| Q |
208 |
aacaacattgcaactacattgaccatatttttcgcaatatgaaggtttatgctgtgaccgccaccacgatttaaaaccatacacttagacaactannnnn |
307 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||| |
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| T |
26610194 |
aacaacattgcaactacattgaccacatttttcgcaatatgaaggtttacgttgtgaccgacaccacgatttaaaaccatacacttaaacaact-ttttt |
26610096 |
T |
|
| Q |
308 |
nncaacggcaaaatttattaaaacctaaatctatgctcaacatgaacagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacaca |
407 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26610095 |
ttcaacggcaaaatttattataacctaaatctctgctcaacatgaacagagatcggtaaatcagagactacaaagatgtcgtatgtaaacagaacacaca |
26609996 |
T |
|
| Q |
408 |
aaataaacaccaataaagacacgaatgcactcaccacatatccaagacctaccttcaacacacactcgttgattatagttaattcacttatttattttct |
507 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
26609995 |
aaataaacaccaacaaagacacgaatgcactccccacatatccaagacctaccttcaacacacactcattgattatagataattcacttatttattttct |
26609896 |
T |
|
| Q |
508 |
atatgaaacttgagttgttaattgtggcatgataagatgtcatgttcaaggtaggattaggcagccacgatgaaaacaaatctgaagacttttgtgagct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609895 |
atatgaaacttgagttgttaattgtggcatgataagatgtcatgttcaaggtaggattaggcagccacgatgaaaacaaatctgaagacttttgtgagct |
26609796 |
T |
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| Q |
608 |
gtatagatccatctccatcgtatcattccctaatgaatcatgtcattaa |
656 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26609795 |
gtatagatccatctccatcgtatcattccctaatgaatcatgtcattaa |
26609747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 468
Target Start/End: Original strand, 8987582 - 8987700
Alignment:
| Q |
351 |
gaacagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaa-tgcactcaccacatatc |
449 |
Q |
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|||||||||| ||||||||||||||||| ||| | ||| || | |||||| ||||||||||||||||||||||||||| | ||| || ||| | | |
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| T |
8987582 |
gaacagagattggtaaatcagagactacgaaggcaccatatatatgcggaacacccaaaataaacaccaataaagacacgaaatacacacagcacccacc |
8987681 |
T |
|
| Q |
450 |
caagacctaccttcaacac |
468 |
Q |
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| T |
8987682 |
taagacctaccttcaacac |
8987700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 313 - 433
Target Start/End: Original strand, 21181 - 21301
Alignment:
| Q |
313 |
cggcaaaatttattaaaacctaaatctatgctcaacatgaacagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaata |
412 |
Q |
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|||||||||||||| ||| || |||| ||| ||| | ||||| | | | |||||||||||||||||||| |||||||| ||| | |||||| |||||| |
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| T |
21181 |
cggcaaaatttatttaaaactcgatctctgcacaagacgaacaaaaacctgtaaatcagagactacaaaggtgtcgtatataggcggaacacccaaaatg |
21280 |
T |
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| Q |
413 |
aacaccaataaagacacgaat |
433 |
Q |
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|||| |||||||||||||||| |
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| T |
21281 |
aacatcaataaagacacgaat |
21301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 21030060 - 21029981
Alignment:
| Q |
343 |
ctcaacatgaacagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaata |
422 |
Q |
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||||||||||| |||| |||||||||| ||||||||||| || ||||||||| | |||||| ||||||||||||||||| |
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| T |
21030060 |
ctcaacatgaatcgagaccggtaaatcaaagactacaaaggtgccgtatgtaggcggaacacccaaaataaacaccaata |
21029981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 5747022 - 5746925
Alignment:
| Q |
372 |
agactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaa-tgcactcaccacatatccaagacctaccttcaacac |
468 |
Q |
| |
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||||||||||| ||||||| ||| | |||||| ||||| |||| ||||||||||||||| | ||| || ||| || | |||||||||||||||||| |
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| T |
5747022 |
agactacaaaggcgtcgtatataggcggaacacctaaaatgaacatcaataaagacacgaattacacacatcacctacctaagacctaccttcaacac |
5746925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 468
Target Start/End: Original strand, 33283620 - 33283733
Alignment:
| Q |
355 |
agagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacacgaatgcactcaccacatatccaaga |
454 |
Q |
| |
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|||||||||||||||||||| || ||||| || |||| ||||| ||||| ||||||||||||| ||||| |||||||| | || ||| ||||||||| |
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| T |
33283620 |
agagatcggtaaatcagagattataaagacgttgtatatagacggaacatccaaaataaacaccgataaaaacacgaatacctacatcacctatccaaga |
33283719 |
T |
|
| Q |
455 |
cctaccttcaacac |
468 |
Q |
| |
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|||| |||||||| |
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| T |
33283720 |
cctaatttcaacac |
33283733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Original strand, 43344505 - 43344593
Alignment:
| Q |
341 |
tgctcaacatgaacagagatcggtaaatcagagactacaaagatgtcgtatgtagacagaacacacaaaataaacaccaataaagacac |
429 |
Q |
| |
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||||||| | ||| ||||| ||||||| ||||||||||||| || ||||| ||| | ||| || |||||||||||||||||||||||| |
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| T |
43344505 |
tgctcaagacgaatagagaccggtaaaccagagactacaaatgtgccgtatataggcggaaaactcaaaataaacaccaataaagacac |
43344593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 15817012 - 15817072
Alignment:
| Q |
321 |
tttattaaaacctaaatctatgctcaacatgaacagagatcggtaaatcagagactacaaa |
381 |
Q |
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|||||||||| ||| |||| ||||||| ||||||||||| | || ||| |||||||||||| |
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| T |
15817012 |
tttattaaaaactagatctctgctcaagatgaacagagaccagtcaattagagactacaaa |
15817072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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