View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_high_32 (Length: 340)
Name: NF7750_high_32
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 31016268 - 31016115
Alignment:
| Q |
170 |
aaataatattaattactgaattgttttgtcttatactttcatttatttatttcatacatgctgttgctatccaccagttcaatatt----tatttaatta |
265 |
Q |
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| T |
31016268 |
aaataatattaattactgaattgttttgtcttatactttcatttatttatttcatatatgctgttgctatccaccagttcaatgttgggaaatttaatta |
31016169 |
T |
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| Q |
266 |
gctggagtatataataatattgtcaattacattttcatcaatcacaaggtgaga |
319 |
Q |
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| T |
31016168 |
gctggagtatataataatattgtcaattacattttcatcaatcacaaggtgaga |
31016115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 31016323 - 31016266
Alignment:
| Q |
48 |
taatatctaattacacattatcattacaaatctatgaagttaattaataacgcggaaa |
105 |
Q |
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| T |
31016323 |
taatatctaattacacattatcattacaaatctatgaagttaattaataacgcggaaa |
31016266 |
T |
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