View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_high_33 (Length: 339)

Name: NF7750_high_33
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_high_33
NF7750_high_33
[»] chr1 (14 HSPs)
chr1 (1-339)||(49063908-49064246)
chr1 (1-339)||(49048856-49049194)
chr1 (135-264)||(47840406-47840535)
chr1 (121-264)||(2540907-2541050)
chr1 (40-124)||(47840570-47840654)
chr1 (58-125)||(48005381-48005448)
chr1 (40-125)||(2540802-2540887)
chr1 (135-239)||(47830347-47830451)
chr1 (192-264)||(48005541-48005613)
chr1 (38-125)||(47830485-47830572)
chr1 (40-125)||(47825769-47825854)
chr1 (40-125)||(49045520-49045605)
chr1 (152-252)||(47825618-47825718)
chr1 (192-248)||(49045696-49045752)
[»] chr2 (3 HSPs)
chr2 (1-337)||(39706015-39706351)
chr2 (4-125)||(11620209-11620330)
chr2 (121-239)||(11620350-11620468)
[»] chr3 (3 HSPs)
chr3 (1-332)||(9757246-9757577)
chr3 (152-264)||(20960191-20960303)
chr3 (152-264)||(20974096-20974208)
[»] scaffold0121 (2 HSPs)
scaffold0121 (192-248)||(35192-35248)
scaffold0121 (40-125)||(35016-35101)
[»] chr8 (1 HSPs)
chr8 (121-248)||(16776205-16776332)
[»] chr7 (1 HSPs)
chr7 (192-264)||(22650742-22650814)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 49063908 - 49064246
Alignment:
Q  1 gatgagctgagcaatttgcacaaggaaaccgatgctaagttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaag 100  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49063908 gatgagctgagcaatttgcacaaggaaactgaggctaagttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatatttaagaaag 49064007  T
Q  101 cttcggaggagcttaagaaacttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatca 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49064008 ctttggaggagcttaagaaacttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatca 49064107  T
Q  201 tcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaattgcaaactcatttctttgatggctcgatgattcct 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  49064108 tcaaccaaatcctcaacaagctgaaatgtttccgccacaaatttttcaaaacgctatgttgcaattgcaaactcatttctttgatggctcgatgattcct 49064207  T
Q  301 caccgtgtcttcaataatatggtgtaataatatgttctg 339  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  49064208 caccatgtcttcaataatatggtgtaataatatgttctg 49064246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 49048856 - 49049194
Alignment:
Q  1 gatgagctgagcaatttgcacaaggaaaccgatgctaagttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaag 100  Q
    |||||||||||| |||| | ||||||||| || ||||| |||||||||||||||   |||||||| |||||||  |||||||||||| ||||||| || |    
T  49048856 gatgagctgagccattttctcaaggaaacagaggctaatttttggtgggcttgtccggttgatggaatgaataaagatcaacttgaattattcaaaaagg 49048955  T
Q  101 cttcggaggagcttaagaaacttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatca 200  Q
    | | ||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||  |||| ||||||||| |||||||||||||    
T  49048956 cattggaggagcttaagaaacttctaattcaacatgctacaactcgaactcttccattttttgttggcaatgcttcttcctcgaacgtttatctccatca 49049055  T
Q  201 tcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaattgcaaactcatttctttgatggctcgatgattcct 300  Q
    ||| |||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||  ||||||| |||||||| || ||||| |||    
T  49049056 tcagccaaatgctcaacaagctgaaatgttgccaccacaattttttcaaaaccctatgttgcaattgcagcctcatttgtttgatggatcaatgatgcct 49049155  T
Q  301 caccgtgtcttcaataatatggtgtaataatatgttctg 339  Q
    |||| || |||||||||||||||||||||||||||||||    
T  49049156 caccatggcttcaataatatggtgtaataatatgttctg 49049194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 47840535 - 47840406
Alignment:
Q  135 tgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaagctgaaatgtttcca 234  Q
    |||| |||||| ||||||||||||||||||||| ||   ||||||||| |||||   ||||||||||||||||||||||| ||| ||| |||||| ||||    
T  47840535 tgctcctactcaaactcttccattttttgttggaaatggttcatcctctaacatccctctccatcatcaaccaaatcctccacaggctcaaatgtatcca 47840436  T
Q  235 ccacaaatttttcaaaacgctatgctgcaa 264  Q
     ||||  ||||||| ||| ||||| |||||    
T  47840435 acacagttttttcagaaccctatgttgcaa 47840406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 264
Target Start/End: Original strand, 2540907 - 2541050
Alignment:
Q  121 cttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaag 220  Q
    |||||||| |||  |||| |||||| |||  |||||||||||||||| ||   ||||||||| |||||   |||| ||||||||||||||||||  |||     
T  2540907 cttgtaatccaggctgctcctactcaaacctttccattttttgttggaaatggttcatcctctaacatgcctctcgatcatcaaccaaatcctcggcaaa 2541006  T
Q  221 ctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaa 264  Q
    || ||||||||||| ||||| ||||||| ||| ||||| |||||    
T  2541007 ctcaaatgtttccagcacaactttttcagaaccctatgttgcaa 2541050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 47840654 - 47840570
Alignment:
Q  40 ttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttg 124  Q
    |||||||||||| ||   |||||||||||||||||||  ||||||||| |||||||||| |||| || |||| ||||||||||||    
T  47840654 ttttggtgggctggtcccgttgatgggatgaatagggtccaacttgaattattcaagaaggctttgggggaggttaagaaacttg 47840570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 48005381 - 48005448
Alignment:
Q  58 gttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttgt 125  Q
    |||||||||||||| ||||  ||||||||| |||||||||| | || |||||||||||||||||||||    
T  48005381 gttgatgggatgaacagggtccaacttgaattattcaagaatgatttggaggagcttaagaaacttgt 48005448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 2540802 - 2540887
Alignment:
Q  40 ttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttgt 125  Q
    |||||||||||| ||   |||||||||||||||||||  ||||||||| | ||||| || |||| ||||||| |||||||||||||    
T  2540802 ttttggtgggctggttccgttgatgggatgaatagggcccaacttgaagttttcaaaaaggctttggaggagattaagaaacttgt 2540887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 47830451 - 47830347
Alignment:
Q  135 tgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaagctgaaatgtttcca 234  Q
    |||| |||||| |||  ||| |||||||| |||||| | ||||||||| |||||   |||||||||||||||||||||||  ||| || |||||||||||    
T  47830451 tgctcctactcaaaccattcaattttttggtggcaatagttcatcctctaacatgcctctccatcatcaaccaaatcctccgcaaactcaaatgtttcca 47830352  T
Q  235 ccaca 239  Q
     ||||    
T  47830351 acaca 47830347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 48005541 - 48005613
Alignment:
Q  192 tctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaa 264  Q
    ||||||||||||| |||||| || ||||||| ||||||||||| ||||  ||||| | ||| |||||||||||    
T  48005541 tctccatcatcaatcaaatcatccacaagctaaaatgtttccagcacagttttttgataaccctatgctgcaa 48005613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 47830572 - 47830485
Alignment:
Q  38 agttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttgt 125  Q
    |||||||||||||| ||  |||||||||||||||||| |  ||||||||| | ||||| || |||| |||||||   |||||||||||    
T  47830572 agttttggtgggctggtcctgttgatgggatgaatagagcccaacttgaatttttcaaaaaggctttggaggagaccaagaaacttgt 47830485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 47825854 - 47825769
Alignment:
Q  40 ttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttgt 125  Q
    |||||||||||| ||  |||| ||||||||| |||||| ||||||||| | ||||| || |||| ||||| ||||  |||||||||    
T  47825854 ttttggtgggctggtcctgttaatgggatgagtagggaccaacttgaatttttcaaaaaggctttggaggcgctttcgaaacttgt 47825769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 49045520 - 49045605
Alignment:
Q  40 ttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttgt 125  Q
    |||||||||||||||    || |||||||||||||||  ||||||||| ||||||||||   || |  ||||||||||||||||||    
T  49045520 ttttggtgggcttgtccgattaatgggatgaatagggcacaacttgaattattcaagaagattttgttggagcttaagaaacttgt 49045605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 47825718 - 47825618
Alignment:
Q  152 ttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaa 251  Q
    |||||||||||||||| ||   ||||||||  |||||   |||| |||||||| |||||||||  ||| || ||||||||||| ||||  ||||||||||    
T  47825718 ttccattttttgttggaaatggttcatcctttaacatgcctctcgatcatcaatcaaatcctccgcaaactcaaatgtttccaacacagttttttcaaaa 47825619  T
Q  252 c 252  Q
    |    
T  47825618 c 47825618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 49045696 - 49045752
Alignment:
Q  192 tctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttca 248  Q
    ||||||| |||| ||||||||||||||| |||| || ||| | ||||||||||||||    
T  49045696 tctccattatcagccaaatcctcaacaaactgagatattttcgccacaaatttttca 49045752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 39706015 - 39706351
Alignment:
Q  1 gatgagctgagcaatttgcacaaggaaaccgatgctaagttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaag 100  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||   | |||||| ||||||||||||||||||||| |||||||||| |    
T  39706015 gatgagctgagcaatttgcacaaggaaacccaggctaagttttggtgggcttgtccggctgatggtatgaatagggatcaacttgaattattcaagaagg 39706114  T
Q  101 cttcggaggagcttaagaaacttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatca 200  Q
    ||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39706115 ctttggaggagcttaagaaacttgtaattcagcatgctactattcaaactcttccattttttgttggcaacgcttcatcctcgaacatttatctccatca 39706214  T
Q  201 tcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaattgcaaactcatttctttgatggctcgatgattcct 300  Q
    ||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||  ||||||| |||||||| | |||||| |||    
T  39706215 tcagccaattcctcaacaagctcaaatgtttccaccacaaatttttcaaaaccctatgttgcaattgcagcctcatttgtttgatggattgatgatgcct 39706314  T
Q  301 caccgtgtcttcaataatatggtgtaataatatgttc 337  Q
    |||| || |||||||||||||||||||||||||||||    
T  39706315 caccatggcttcaataatatggtgtaataatatgttc 39706351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 11620209 - 11620330
Alignment:
Q  4 gagctgagcaatttgcacaaggaaaccgatgctaagttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagctt 103  Q
    ||||||||||| ||||||||||  || ||  || | |||||||||||| ||   |||||||||||||||||||  ||||||||| |||||||||| |||     
T  11620209 gagctgagcaacttgcacaaggcgactgagactcaattttggtgggctggtcccgttgatgggatgaatagggcccaacttgaattattcaagaaggctc 11620308  T
Q  104 cggaggagcttaagaaacttgt 125  Q
     ||| |||||||||||||||||    
T  11620309 tggatgagcttaagaaacttgt 11620330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 11620350 - 11620468
Alignment:
Q  121 cttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaag 220  Q
    |||||||| |||  |||| |||||| ||| ||||| | ||||| ||| |||| ||| ||||| |||||   ||||||||||||||||||||||| |||||    
T  11620350 cttgtaatccagggtgctcctactcaaacccttccgtattttgctggaaacagttcgtcctccaacatgcctctccatcatcaaccaaatcctccacaag 11620449  T
Q  221 ctgaaatgtttccaccaca 239  Q
    || | ||||||||| ||||    
T  11620450 ctcatatgtttccagcaca 11620468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 9757577 - 9757246
Alignment:
Q  1 gatgagctgagcaatttgcacaaggaaaccgatgctaagttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaag 100  Q
    |||||||||||| |||||| ||||||||| || || || |||||||||||||||   |||||||| ||||||| ||||||||||||| ||||||| || |    
T  9757577 gatgagctgagccatttgctcaaggaaacggaggcaaatttttggtgggcttgtccggttgatggaatgaataaggatcaacttgaattattcaaaaagg 9757478  T
Q  101 cttcggaggagcttaagaaacttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatca 200  Q
    | | ||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||    
T  9757477 cattggaggagcttaagaaacttctaattcaacatgctacaactcgaactcttccattttttgttggcaatgcttcttcctcgaacatttatctccatca 9757378  T
Q  201 tcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaattgcaaactcatttctttgatggctcgatgattcct 300  Q
    ||| |||||| |||||||| |||||||||||||| ||||  ||||||||||  ||||| ||||||||||  ||||||| |||||||| || ||||| |||    
T  9757377 tcagccaaatactcaacaatctgaaatgtttccatcacatttttttcaaaatcctatgttgcaattgcagcctcatttgtttgatggatcaatgatgcct 9757278  T
Q  301 caccgtgtcttcaataatatggtgtaataata 332  Q
    |||| || ||||||||||||||||||||||||    
T  9757277 caccatggcttcaataatatggtgtaataata 9757246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 20960191 - 20960303
Alignment:
Q  152 ttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaa 251  Q
    |||| ||||||||||| |||| ||||||||| |||||   ||||||||||  ||||||||||| ||||||| | ||| ||||| || |  ||| ||||||    
T  20960191 ttccgttttttgttggaaacagttcatcctctaacatgcctctccatcatacaccaaatcctccacaagctcagatgcttccagcagagttttatcaaaa 20960290  T
Q  252 cgctatgctgcaa 264  Q
    | ||||| |||||    
T  20960291 ccctatgttgcaa 20960303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 264
Target Start/End: Original strand, 20974096 - 20974208
Alignment:
Q  152 ttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaa 251  Q
    |||| ||||||||||| | || ||||||||  |||||   |||||||||||||| |||||||| ||||||| | ||| ||||| ||||  ||| ||| ||    
T  20974096 ttccgttttttgttggaagcaattcatcctttaacatgcctctccatcatcaactaaatcctccacaagctcagatgcttccagcacagttttatcagaa 20974195  T
Q  252 cgctatgctgcaa 264  Q
    | ||||| |||||    
T  20974196 ccctatgttgcaa 20974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 35192 - 35248
Alignment:
Q  192 tctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttca 248  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  35192 tctccattatcagccaaatcctcaacaaactgaaatgtttccaccacaattttttca 35248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 35016 - 35101
Alignment:
Q  40 ttttggtgggcttgtgttgttgatgggatgaatagggatcaacttgaaatattcaagaaagcttcggaggagcttaagaaacttgt 125  Q
    |||||||||||||||    ||| |||||||||||||| |||||||||| ||||||||||   ||  | ||||||||||||||||||    
T  35016 ttttggtgggcttgtccaattggtgggatgaatagggctcaacttgaattattcaagaagattttagtggagcttaagaaacttgt 35101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 16776332 - 16776205
Alignment:
Q  121 cttgtaattcagcatgctgctactcgaactcttccattttttgttggcaacacttcatcctcgaacatttatctccatcatcaaccaaatcctcaacaag 220  Q
    ||||||||||||  |||| |||||| |||  |||||||||||||||| ||   ||||||||| |||||   ||||||||||||||||||||||   |||     
T  16776332 cttgtaattcagggtgctcctactcaaacctttccattttttgttggaaatggttcatcctctaacatgcctctccatcatcaaccaaatccttcgcaaa 16776233  T
Q  221 ctgaaatgtttccaccacaaatttttca 248  Q
    |  ||||||||||| ||||| |||||||    
T  16776232 cccaaatgtttccagcacaattttttca 16776205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 22650742 - 22650814
Alignment:
Q  192 tctccatcatcaaccaaatcctcaacaagctgaaatgtttccaccacaaatttttcaaaacgctatgctgcaa 264  Q
    ||||||| |||| |||||||||||||||  ||| |||||| | ||||||| |||||| ||| ||||| |||||    
T  22650742 tctccattatcagccaaatcctcaacaaattgagatgttttcgccacaaaattttcataaccctatgttgcaa 22650814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University