View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_high_35 (Length: 327)

Name: NF7750_high_35
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_high_35
NF7750_high_35
[»] chr7 (3 HSPs)
chr7 (3-321)||(44650836-44651154)
chr7 (5-40)||(40854554-40854589)
chr7 (5-37)||(35822865-35822897)
[»] chr5 (3 HSPs)
chr5 (5-42)||(38493774-38493811)
chr5 (5-40)||(9168055-9168090)
chr5 (5-40)||(16690648-16690683)
[»] chr8 (11 HSPs)
chr8 (3-39)||(5574402-5574438)
chr8 (5-40)||(35067309-35067344)
chr8 (5-40)||(41639685-41639720)
chr8 (5-37)||(3413083-3413115)
chr8 (5-40)||(6972291-6972326)
chr8 (5-40)||(13971053-13971088)
chr8 (5-40)||(39453204-39453239)
chr8 (5-39)||(6440230-6440264)
chr8 (3-36)||(3270772-3270805)
chr8 (5-37)||(42619883-42619915)
chr8 (5-37)||(42786548-42786580)
[»] chr3 (8 HSPs)
chr3 (5-40)||(51699007-51699042)
chr3 (5-40)||(52714870-52714905)
chr3 (6-39)||(48353134-48353167)
chr3 (5-40)||(1436965-1437000)
chr3 (5-40)||(29916927-29916962)
chr3 (5-40)||(29966080-29966115)
chr3 (1-36)||(54099248-54099283)
chr3 (5-39)||(49021848-49021882)
[»] chr2 (10 HSPs)
chr2 (5-40)||(7084602-7084637)
chr2 (5-40)||(21738505-21738540)
chr2 (1-40)||(26290738-26290777)
chr2 (5-40)||(33616604-33616639)
chr2 (6-40)||(19843634-19843668)
chr2 (5-40)||(6336387-6336422)
chr2 (5-40)||(43658599-43658634)
chr2 (6-40)||(5361930-5361964)
chr2 (6-40)||(40599180-40599214)
chr2 (5-37)||(16799808-16799840)
[»] scaffold0662 (1 HSPs)
scaffold0662 (5-40)||(1293-1328)
[»] chr4 (3 HSPs)
chr4 (5-40)||(47015154-47015189)
chr4 (6-40)||(16019626-16019660)
chr4 (6-35)||(38792795-38792824)
[»] chr1 (8 HSPs)
chr1 (5-40)||(740853-740888)
chr1 (5-40)||(5771144-5771179)
chr1 (5-40)||(23665625-23665660)
chr1 (5-40)||(29359892-29359927)
chr1 (6-40)||(34817932-34817966)
chr1 (5-38)||(49020295-49020328)
chr1 (3-36)||(49446685-49446718)
chr1 (5-37)||(36750387-36750419)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 44651154 - 44650836
Alignment:
Q  3 tagttgtcaaccaaattgatgttcaaataacattgctccaccgacaattggtgcggtcaccaatatatatttgctactccccctnnnnnnnnnn-tatat 101  Q
    ||||||||||  ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||           |||||    
T  44651154 tagttgtcaatgaaattgatgttcaaatatcattgttacaccgacaattggtgcggtcaccaatatatatttgctactccccctcaataaaaaaatatat 44651055  T
Q  102 tgccactcttataaacgtgcatatcgctataaaaatcccaatccaaaaccttaattttgtgacataataataactagtatttatttttgctttagttcca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  44651054 tgccactcttataaacgtgcatatcgctataaaaatcccaatccaaaaccttaattt-gtgacataataataactagtatttatttttgatttagttcca 44650956  T
Q  202 cctagctagctagtttatccccttcctctcaacaaacaattcccaactcaaaatcatatggctaattcattgcctttcttgcttattattttcatgcttg 301  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44650955 cctagctagctagtttatccccttgctctcaacaaacaattcccaactcaaaatcatatggctaattcattgcctttcttgcttattattttcatgcttg 44650856  T
Q  302 tattttcagccaacaccaaa 321  Q
    ||||||||||||||||||||    
T  44650855 tattttcagccaacaccaaa 44650836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 40854589 - 40854554
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  40854589 gttgtcaaccaaattgatgttcaaataacattgctc 40854554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 35822897 - 35822865
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattg 37  Q
    |||||||||||||||||||||||||||||||||    
T  35822897 gttgtcaaccaaattgatgttcaaataacattg 35822865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 38493774 - 38493811
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctcca 42  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38493774 gttgtcaaccaaattgatgttcaaataacattgctcca 38493811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 9168090 - 9168055
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  9168090 gttgtcaaccaaattgatgttcaaataacattgctc 9168055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 16690648 - 16690683
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||||||||||||| |||||||||||||||||    
T  16690648 gttgtcaaccaaattgatattcaaataacattgctc 16690683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 5574402 - 5574438
Alignment:
Q  3 tagttgtcaaccaaattgatgttcaaataacattgct 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  5574402 tagttgtcaaccaaattgatgttcaaataacattgct 5574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 35067309 - 35067344
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  35067309 gttgtcaaccaaattgatgttcaaataacattgctc 35067344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 41639720 - 41639685
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  41639720 gttgtcaaccaaattgatgttcaaataacattgctc 41639685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 3413115 - 3413083
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattg 37  Q
    |||||||||||||||||||||||||||||||||    
T  3413115 gttgtcaaccaaattgatgttcaaataacattg 3413083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 6972291 - 6972326
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6972291 gttgtcaactaaattgatgttcaaataacattgctc 6972326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 13971053 - 13971088
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13971053 gttgtcaaccaaactgatgttcaaataacattgctc 13971088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 39453239 - 39453204
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||| |||||||||||||||||||||||||||    
T  39453239 gttgtcaatcaaattgatgttcaaataacattgctc 39453204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 6440230 - 6440264
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgct 39  Q
    |||||||||||| ||||||||||||||||||||||    
T  6440230 gttgtcaaccaagttgatgttcaaataacattgct 6440264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 3270805 - 3270772
Alignment:
Q  3 tagttgtcaaccaaattgatgttcaaataacatt 36  Q
    |||||||||||||| |||||||||||||||||||    
T  3270805 tagttgtcaaccaagttgatgttcaaataacatt 3270772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 42619915 - 42619883
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattg 37  Q
    |||||||| ||||||||||||||||||||||||    
T  42619915 gttgtcaatcaaattgatgttcaaataacattg 42619883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 42786580 - 42786548
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattg 37  Q
    |||||||||||| ||||||||||||||||||||    
T  42786580 gttgtcaaccaagttgatgttcaaataacattg 42786548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 51699007 - 51699042
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  51699007 gttgtcaaccaaattgatgttcaaataacattgctc 51699042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 52714870 - 52714905
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  52714870 gttgtcaaccaaattgatgttcaaataacattgctc 52714905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 48353134 - 48353167
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacattgct 39  Q
    ||||||||||||||||||||||||||||||||||    
T  48353134 ttgtcaaccaaattgatgttcaaataacattgct 48353167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 1436965 - 1437000
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1436965 gttgtaaaccaaattgatgttcaaataacattgctc 1437000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 29916962 - 29916927
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29916962 gttgtcaaccaaattgatgttcaaataacgttgctc 29916927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 29966115 - 29966080
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29966115 gttgtcaaccaaattgatgttcaaataacgttgctc 29966080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54099283 - 54099248
Alignment:
Q  1 tgtagttgtcaaccaaattgatgttcaaataacatt 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  54099283 tgtaattgtcaaccaaattgatgttcaaataacatt 54099248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 49021848 - 49021882
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgct 39  Q
    ||||||||||||||||| |||||||||||||||||    
T  49021848 gttgtcaaccaaattgaggttcaaataacattgct 49021882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 7084637 - 7084602
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  7084637 gttgtcaaccaaattgatgttcaaataacattgctc 7084602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 21738540 - 21738505
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  21738540 gttgtcaaccaaattgatgttcaaataacattgctc 21738505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26290777 - 26290738
Alignment:
Q  1 tgtagttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  26290777 tgtagttatcaaccaaattgatgttcaaataacattgctc 26290738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 33616604 - 33616639
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||||||||||||||||||    
T  33616604 gttgtcaaccaaattgatgttcaaataacattgctc 33616639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 19843634 - 19843668
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||||||||||||||||||||||||||||||    
T  19843634 ttgtcaaccaaattgatgttcaaataacattgctc 19843668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 6336387 - 6336422
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||||||||||||||||||||||| |||||||    
T  6336387 gttgtcaaccaaattgatgttcaaataatattgctc 6336422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 43658634 - 43658599
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||| ||||||||||||||||||||    
T  43658634 gttgtcaaccaaattaatgttcaaataacattgctc 43658599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 5361930 - 5361964
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||||||||||| |||||||||||||    
T  5361930 ttgtcaaccaaattgatgttcgaataacattgctc 5361964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 40599214 - 40599180
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||||||||| ||||||||||||||||||||    
T  40599214 ttgtcaaccaaattaatgttcaaataacattgctc 40599180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 16799808 - 16799840
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattg 37  Q
    ||||||||| |||||||||||||||||||||||    
T  16799808 gttgtcaactaaattgatgttcaaataacattg 16799840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 1293 - 1328
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1293 gttgtcaaccaaactgatgttcaaataacattgctc 1328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 47015154 - 47015189
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||||||||| ||||||||||||||||||||||    
T  47015154 gttgtcaaccaaactgatgttcaaataacattgctc 47015189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 16019626 - 16019660
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  16019626 ttgtcaatcaaattgatgttcaaataacattgctc 16019660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 38792824 - 38792795
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacat 35  Q
    ||||||||||||||||||||||||||||||    
T  38792824 ttgtcaaccaaattgatgttcaaataacat 38792795  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 740888 - 740853
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||| |||||||||||||||||||||||||||    
T  740888 gttgtcaatcaaattgatgttcaaataacattgctc 740853  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 5771179 - 5771144
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||| |||||||||||||||||||||||||||    
T  5771179 gttgtcaatcaaattgatgttcaaataacattgctc 5771144  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 23665660 - 23665625
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||||||||||||| |||||||||||||||||    
T  23665660 gttgtcaaccaaattgatattcaaataacattgctc 23665625  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 29359892 - 29359927
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||| |||||||||||||||||||||||||||    
T  29359892 gttgtcaatcaaattgatgttcaaataacattgctc 29359927  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 34817966 - 34817932
Alignment:
Q  6 ttgtcaaccaaattgatgttcaaataacattgctc 40  Q
    |||||||| ||||||||||||||||||||||||||    
T  34817966 ttgtcaactaaattgatgttcaaataacattgctc 34817932  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 49020328 - 49020295
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattgc 38  Q
    |||||||||||||||||||||||||||| |||||    
T  49020328 gttgtcaaccaaattgatgttcaaataaaattgc 49020295  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 49446718 - 49446685
Alignment:
Q  3 tagttgtcaaccaaattgatgttcaaataacatt 36  Q
    |||||||||| |||||||||||||||||||||||    
T  49446718 tagttgtcaagcaaattgatgttcaaataacatt 49446685  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 36750419 - 36750387
Alignment:
Q  5 gttgtcaaccaaattgatgttcaaataacattg 37  Q
    ||||||||||||||| |||||||||||||||||    
T  36750419 gttgtcaaccaaattaatgttcaaataacattg 36750387  T

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