View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_high_42 (Length: 288)

Name: NF7750_high_42
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_high_42
NF7750_high_42
[»] chr7 (30 HSPs)
chr7 (66-267)||(8591343-8591544)
chr7 (84-270)||(8602697-8602883)
chr7 (90-270)||(8647670-8647850)
chr7 (90-270)||(7876787-7876967)
chr7 (90-270)||(8610633-8610813)
chr7 (90-210)||(8582632-8582752)
chr7 (90-219)||(13332154-13332283)
chr7 (143-270)||(8655371-8655498)
chr7 (88-261)||(29576951-29577124)
chr7 (90-258)||(8577258-8577426)
chr7 (90-270)||(8668434-8668614)
chr7 (125-219)||(3148375-3148469)
chr7 (85-213)||(8546639-8546767)
chr7 (90-210)||(8572559-8572679)
chr7 (125-216)||(10493008-10493099)
chr7 (90-219)||(8538773-8538902)
chr7 (90-267)||(8635455-8635632)
chr7 (90-267)||(29581121-29581298)
chr7 (134-230)||(6790423-6790519)
chr7 (139-219)||(17261410-17261490)
chr7 (119-201)||(8660242-8660324)
chr7 (119-219)||(17269098-17269198)
chr7 (119-230)||(1302309-1302420)
chr7 (80-183)||(8568797-8568900)
chr7 (90-219)||(27829349-27829478)
chr7 (118-219)||(8584540-8584641)
chr7 (90-219)||(8630197-8630326)
chr7 (98-164)||(8382289-8382355)
chr7 (123-207)||(8104067-8104151)
chr7 (123-207)||(8016309-8016393)
[»] chr5 (2 HSPs)
chr5 (125-270)||(28220951-28221096)
chr5 (134-270)||(42554140-42554276)
[»] chr4 (4 HSPs)
chr4 (90-219)||(9323068-9323197)
chr4 (90-219)||(9377547-9377676)
chr4 (90-219)||(9335040-9335168)
chr4 (118-270)||(35133451-35133603)
[»] chr2 (8 HSPs)
chr2 (118-267)||(12257870-12258019)
chr2 (90-230)||(16656593-16656733)
chr2 (90-267)||(12244359-12244536)
chr2 (134-270)||(43626333-43626469)
chr2 (110-219)||(12235787-12235896)
chr2 (90-267)||(14705432-14705609)
chr2 (90-267)||(7543246-7543423)
chr2 (148-219)||(16661070-16661141)
[»] chr1 (3 HSPs)
chr1 (134-270)||(15596072-15596208)
chr1 (125-219)||(4677544-4677638)
chr1 (125-267)||(34465204-34465346)
[»] chr8 (2 HSPs)
chr8 (90-213)||(12529837-12529960)
chr8 (140-270)||(43745843-43745970)
[»] chr6 (1 HSPs)
chr6 (119-162)||(28911312-28911355)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 66 - 267
Target Start/End: Original strand, 8591343 - 8591544
Alignment:
Q  66 atgcaggaagatagaaaaataaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagt 165  Q
    ||||||||||||| ||| ||||| |||| |||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||    
T  8591343 atgcaggaagataaaaagataaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagt 8591442  T
Q  166 aaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgtt 265  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  8591443 aaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctctgctgtattgttttggtcctgccaaactgctacacatgaatacgtt 8591542  T
Q  266 gt 267  Q
    ||    
T  8591543 gt 8591544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 270
Target Start/End: Original strand, 8602697 - 8602883
Alignment:
Q  84 ataaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaagg 183  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  8602697 ataaattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaagg 8602796  T
Q  184 agtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| ||||||||    
T  8602797 agtagttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagctacacatgaataggttgttcc 8602883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 8647670 - 8647850
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||| || ||||||||||||||||||||||| || | |||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  8647670 taccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagt 8647769  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||  ||  |||| || || ||||| ||||||||||||||    
T  8647770 tctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttcc 8647850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 270
Target Start/End: Complemental strand, 7876967 - 7876787
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||| | ||||||||| |||||||||||||| |||| |||||||||||||||||||||||  || ||||||||||||||||| || ||    
T  7876967 taccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgt 7876868  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    |||||| ||||| |||||||||||||| ||  ||||||||| ||  ||  |||| || || ||||| ||||||||||||||    
T  7876867 tctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttcc 7876787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 8610633 - 8610813
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||  ||||| | |||||| |||||||| |||||||| |||| |||||| ||||||||||||||| |||  |||||||||||||||||||| ||    
T  8610633 taccaaagactgtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggt 8610732  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    |||||||||||| ||||| || || ||||| ||||| |||||||| || ||||| || || ||||||||||| ||||||||    
T  8610733 tctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttcc 8610813  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 8582632 - 8582752
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||| |||||||||| ||||||||||||||||| |||||||| |||| |||||||||||| ||||||  || ||||||||||||| ||||||| || ||    
T  8582632 taccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgt 8582731  T
Q  190 tctgtttccttgatcattgtg 210  Q
    | |||||||||||||||||||    
T  8582732 tttgtttccttgatcattgtg 8582752  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 13332283 - 13332154
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||||   |||||||  ||||  ||||| || |||| |||||||||||| ||||||||||   | ||||||||||||||||| |||||    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
    ||| ||||||||||||||||||||||||||    
T  13332183 tctatttccttgatcattgtgaataatctc 13332154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 8655371 - 8655498
Alignment:
Q  143 ccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgcc 242  Q
    |||||||||||||||| |||||| |||||||||| |||||| |||||||| || |||||||||||||||||||||||  |||||||||  | |||  |||    
T  8655371 ccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagcc 8655470  T
Q  243 aaactgctacacatgaatacgttgttcc 270  Q
    | || || ||||||||||| ||||||||    
T  8655471 acacagcaacacatgaataggttgttcc 8655498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 261
Target Start/End: Complemental strand, 29577124 - 29576951
Alignment:
Q  88 actaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagta 187  Q
    |||||| ||||||||||| |||||||| || |||||||||||||| |||| || |||||| |||||| |   |||||| ||||| |||| |||||| ||     
T  29577124 actaccgaagatagtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtg 29577025  T
Q  188 gttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaata 261  Q
    ||||| || |||||||||||||| || ||||| |||| ||||||  | |  |||||||||||||| ||||||||    
T  29577024 gttctattgccttgatcattgtggatgatctcagctcgattgttacgctgctgccaaactgctacgcatgaata 29576951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 258
Target Start/End: Original strand, 8577258 - 8577426
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||| ||||| || | ||| |||| |||||| |||||||| |||| ||| |||||||| ||||||  ||  |||||||||||| |||||||||| ||    
T  8577258 taccaaaaatagtattggatggattagtagcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggt 8577357  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatga 258  Q
    ||||||||||||||||||||| ||||| ||| | | || |||||| || ||||| ||| | ||||||||    
T  8577358 tctgtttccttgatcattgtgtataatttctacacgatcgttttgttcatgccatactccaacacatga 8577426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 270
Target Start/End: Original strand, 8668434 - 8668614
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| ||| |||||||||||||| ||||   | ||||||||||||||||| ||  |    
T  8668434 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgttat 8668533  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    || |||||||||||||||||||||||||||  |||| | || ||| ||  |||| || || ||||||||||| ||||||||    
T  8668534 tcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttcc 8668614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 3148375 - 3148469
Alignment:
Q  125 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 219  Q
    ||||| || |||| |||||||| |||||||||||||||||| ||||||||||||||||| || ||| |||| ||||| |||||||||||||||||    
T  3148375 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctc 3148469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 8546639 - 8546767
Alignment:
Q  85 taaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaagga 184  Q
    |||| ||||||| | ||||||  |||||||||||| |||||||||||| |||| ||||||||||| ||||||   ||  || ||||||||| |||||||     
T  8546639 taaattaccaaatacagtgttgattgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggt 8546738  T
Q  185 gtagttctgtttccttgatcattgtgaat 213  Q
    || ||| ||||||||||||||||||||||    
T  8546739 gttgttttgtttccttgatcattgtgaat 8546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 8572559 - 8572679
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||||||| || | ||| |||| |||||| |||||||| |||| |||||| ||||| ||||||  || ||||||||||||| |||| ||||| ||    
T  8572559 taccaaagatagtattggatggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgt 8572658  T
Q  190 tctgtttccttgatcattgtg 210  Q
    |||||||||||| ||||||||    
T  8572659 tctgtttccttggtcattgtg 8572679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 10493099 - 10493008
Alignment:
Q  125 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataat 216  Q
    ||||| || |||| |||||| ||||||||||||||||   | ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  10493099 tgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataat 10493008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 8538773 - 8538902
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||||||||||||||| | ||| |||||||| |||| |||||||||||| | ||||  || | ||||| ||||| ||||||| || ||    
T  8538773 taccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggt 8538872  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
    | ||||||||||||| ||||| || |||||    
T  8538873 tttgtttccttgatcgttgtgtatgatctc 8538902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 267
Target Start/End: Complemental strand, 8635632 - 8635455
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| ||| || | ||||||||| | |||||| ||||| |||| ||||||||||||||||||  | ||||| ||||||||| ||||||| ||  |    
T  8635632 taccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgat 8635533  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    |||||| ||||| |||||||| || ||||| || | |||  ||||    | ||||||||||||||||||||| |||||    
T  8635532 tctgttcccttgctcattgtggatgatctcagcccgattaatttgactatcccaaactgctacacatgaatatgttgt 8635455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 267
Target Start/End: Complemental strand, 29581298 - 29581121
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||||||||||||||||||| |  |||||||||||||| |||| || || |||||||||  |    ||||| ||||| |||| |||||| || ||    
T  29581298 taccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgtggt 29581199  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    ||  || |||||||||||||| || ||||| ||||  ||| | |  || ||||||||||||||||||||||| |||||    
T  29581198 tccattgccttgatcattgtggatgatctcagctcggttgatattctcctgccaaactgctacacatgaataggttgt 29581121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6790423 - 6790519
Alignment:
Q  134 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgt 230  Q
    |||| |||||| ||||||||||| ||||| || ||||||||||||||||| || ||| |||| ||||| |||||||||||||||||  |||||||||    
T  6790423 gcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgt 6790519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 17261410 - 17261490
Alignment:
Q  139 atcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 219  Q
    |||||| |||||||||| ||| | || |||||||||||||||||||||| || |||||||||||||||||||||| |||||    
T  17261410 atcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctc 17261490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 8660242 - 8660324
Alignment:
Q  119 gcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttg 201  Q
    ||||||||||| || |||| ||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| ||||||||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttg 8660324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 219
Target Start/End: Original strand, 17269098 - 17269198
Alignment:
Q  119 gcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 218  Q
    ||||| ||||| || || |||||||| || ||||||| ||| | || ||||||||||||||| ||||||||| |||| |||||||||||||| |||||||    
T  17269098 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatct 17269197  T
Q  219 c 219  Q
    |    
T  17269198 c 17269198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 1302309 - 1302420
Alignment:
Q  119 gcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 218  Q
    ||||||||||| || |||| |||||| ||||||||||||||||| || |||||||||||||| || || ||| |||| ||||| || ||||  || ||||    
T  1302309 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 1302408  T
Q  219 ctgctctattgt 230  Q
    || |||||||||    
T  1302409 ctactctattgt 1302420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 8568797 - 8568900
Alignment:
Q  80 aaaaataaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaag 179  Q
    |||||| || |||||||| ||||||| ||||| ||||||||||| |||||||| |||| |||||||||||| ||||||   | ||| ||||||||| |||    
T  8568797 aaaaatgaattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaag 8568896  T
Q  180 aagg 183  Q
    ||||    
T  8568897 aagg 8568900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 27829478 - 27829349
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||||   ||||| |||||||| || || || |||| ||||||||||||||| || |  || || ||||||||| ||||||| || ||    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
      |||| ||||| |||||||||||||||||    
T  27829378 cttgttgccttgttcattgtgaataatctc 27829349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 8584641 - 8584540
Alignment:
Q  118 agcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatc 217  Q
    |||||||||||  || |||| | |||||| ||||||||||||||| |||||||||||||| ||||| ||  || | || |||| ||| ||||||||||||    
T  8584641 agcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatc 8584542  T
Q  218 tc 219  Q
    ||    
T  8584541 tc 8584540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 8630197 - 8630326
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||||  ||||||    ||||||||||  || |||| | |||||| ||||||||||||||| ||||||||||| || ||||| ||  |    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
    | | || |||| ||||||||||||||||||    
T  8630297 tttattgccttcatcattgtgaataatctc 8630326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 8382355 - 8382289
Alignment:
Q  98 atagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcag 164  Q
    |||||||| ||||||||||| |||| |||||| || |||| |||||||| ||||||||||| |||||    
T  8382355 atagtgttggttgggttagaggcagtctgattcttagcagcatcaccaaccaacctttgatgatcag 8382289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 8104067 - 8104151
Alignment:
Q  123 cctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcatt 207  Q
    ||||||| || |||| |||||| |||||||||| |  |||||| ||||||||| |||| || || |||||||| |||||||||||    
T  8104067 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 8016393 - 8016309
Alignment:
Q  123 cctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcatt 207  Q
    ||||||| || |||| |||||| |||||||||| |  |||||| ||||||||| |||| || || |||| ||| |||||||||||    
T  8016393 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcatt 8016309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 28220951 - 28221096
Alignment:
Q  125 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctc 224  Q
    |||||||| |||| ||| ||||||||||||| |||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||||||||  | |    
T  28220951 tgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccc 28221050  T
Q  225 tattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    |||||| ||  |||||||| || || ||||||||||||||||||||    
T  28221051 tattgtgttcatcttgccacacagcaacacatgaatacgttgttcc 28221096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 134 - 270
Target Start/End: Complemental strand, 42554276 - 42554140
Alignment:
Q  134 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgtttt 233  Q
    |||| ||||||||||||||||| || || ||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||  ||||||| | ||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgtt 42554177  T
Q  234 ggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
      |||| ||| || |  ||||| ||||||||||||||    
T  42554176 catcttcccacacagtaacacacgaatacgttgttcc 42554140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 9323197 - 9323068
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| |||||||||||||||||| ||||   | ||||||||||||||||| || ||    
T  9323197 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9323098  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
    || |||||||||||||||||||||||||||    
T  9323097 tcggtttccttgatcattgtgaataatctc 9323068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 9377676 - 9377547
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| |||||||||||||||||| ||||   | ||||||||||||||||| || ||    
T  9377676 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9377577  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
    || |||||||||||||||||||||||||||    
T  9377576 tcggtttccttgatcattgtgaataatctc 9377547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 9335168 - 9335040
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| ||||||| |||||||||| ||||   | ||||||||||||||||| || ||    
T  9335168 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9335070  T
Q  190 tctgtttccttgatcattgtgaataatctc 219  Q
    || |||||||||||||||||||||||||||    
T  9335069 tcggtttccttgatcattgtgaataatctc 9335040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 35133451 - 35133603
Alignment:
Q  118 agcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatc 217  Q
    |||||| ||||| || |||| |||||| |||||||||||||| | ||| ||||||| | ||||||| || ||| |||| | |||||| |||||||| ||     
T  35133451 agcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatt 35133550  T
Q  218 tctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
    ||  ||| || || ||| |||||||| ||||| ||||||||||||||||||||    
T  35133551 tcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttcc 35133603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 12258019 - 12257870
Alignment:
Q  118 agcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatc 217  Q
    |||||| ||||| || |||| ||||||||||||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatc 12257920  T
Q  218 tctgctctattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    || |||| |   | ||| || |||||||| || || ||||||||||||||    
T  12257919 tcagctcgacaatattgttcctgccaaacagcaacgcatgaatacgttgt 12257870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 16656733 - 16656593
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||| ||||||  ||||||||  ||| | ||||| || |||| |||||| |||||||||||||||| ||| ||||||||||||||||| || ||    
T  16656733 taccaaagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 16656634  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgt 230  Q
    ||||||||| || |||||||| || ||||||||||| ||||    
T  16656633 tctgtttccctggtcattgtgtatgatctctgctctgttgt 16656593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 267
Target Start/End: Complemental strand, 12244536 - 12244359
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||||   | ||||| |||||| |||||||| |||| ||||||||| ||||||||||| ||||| ||||||||| ||||||| || ||    
T  12244536 taccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgt 12244437  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    |||||| || ||||| |||||||| || ||  | | |  || ||| || ||||| ||||| |||||||||||||||||    
T  12244436 tctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgt 12244359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 43626333 - 43626469
Alignment:
Q  134 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgtttt 233  Q
    |||| |||||||||||||||||| || | ||| |||| |||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||  ||||||    
T  43626333 gcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgtttt 43626432  T
Q  234 ggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
      ||  |||| || || | ||| ||||||||||||||    
T  43626433 catcaagccacacagcaatacaagaatacgttgttcc 43626469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 12235787 - 12235896
Alignment:
Q  110 gggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgt 209  Q
    ||||| |||||||| ||||| || |||| ||||||||||||||| ||||  || || ||||||||||||||||| || ||||| || |||||||| ||||    
T  12235787 gggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgt 12235886  T
Q  210 gaataatctc 219  Q
    |||| |||||    
T  12235887 gaatgatctc 12235896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 14705432 - 14705609
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||||   ||||| | |||||| ||||| || |||| ||||||||||||||  ||||  || || |||||||||||||||||||| ||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    ||| || |||||||| |||||||| || ||  ||| ||  | ||| || ||||| ||||| |||||||| ||||||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgt 14705609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 7543246 - 7543423
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    ||||||||| |||||||   ||||| |||||||| ||||| || |||  |||||| |||||||| ||||  || || ||||||||||||||||| || ||    
T  7543246 taccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgt 7543345  T
Q  190 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    |||||| ||||| || |||||||| || ||  ||| || || ||| || ||||| ||||| ||||| || ||||||||    
T  7543346 tctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgt 7543423  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 16661141 - 16661070
Alignment:
Q  148 caacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 219  Q
    |||||||||| ||||||||||||||||||||||||| ||| || |||| |||| ||| ||||| ||||||||    
T  16661141 caacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatctc 16661070  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 15596072 - 15596208
Alignment:
Q  134 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgtttt 233  Q
    |||| ||||||||||||||||||||||| ||| |||| |||||||||||| ||| ||||||||||||| |||||||| ||||||||  ||||||| | ||    
T  15596072 gcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattctgtt 15596171  T
Q  234 ggtcttgccaaactgctacacatgaatacgttgttcc 270  Q
      ||  |||| || || ||||| ||||||||||||||    
T  15596172 catcaagccacacagcaacacaagaatacgttgttcc 15596208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 4677638 - 4677544
Alignment:
Q  125 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 219  Q
    ||||| || |||| || |||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| ||||||| |||||||||    
T  4677638 tgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctc 4677544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 34465346 - 34465204
Alignment:
Q  125 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctc 224  Q
    ||||| || |||| || ||| ||||| |||||||||| ||||||||||||||||||||| || ||| |||| ||||| ||||||| |||||||||| |||    
T  34465346 tgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactc 34465247  T
Q  225 tattgttttggtcttgccaaactgctacacatgaatacgttgt 267  Q
    || ||| ||| || ||||| ||||| |||||||| || |||||    
T  34465246 tactgtgttgttcctgccatactgcaacacatgagtaggttgt 34465204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 12529837 - 12529960
Alignment:
Q  90 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 189  Q
    |||||||||||||||| || |||||||| | ||| |||||||| |||| || ||||||||| || |||  || ||||||||||||| ||||||| || ||    
T  12529837 taccaaagatagtgttggtggggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgt 12529936  T
Q  190 tctgtttccttgatcattgtgaat 213  Q
    | ||||||||||||||||||||||    
T  12529937 tttgtttccttgatcattgtgaat 12529960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 270
Target Start/End: Original strand, 43745843 - 43745970
Alignment:
Q  140 tcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtctt 239  Q
    ||||| |||||||||| || |||||||||||||||||||||||   | ||| |||| |||||||||||||||||||||||  ||||||| | ||  ||||    
T  43745843 tcacctatcaacctttcatgatcagtaaaagcaacaaaagaag---ttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatctt 43745939  T
Q  240 gccaaactgctacacatgaatacgttgttcc 270  Q
    |||| || || ||||| ||||||||||||||    
T  43745940 gccacacagcaacacacgaatacgttgttcc 43745970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 28911312 - 28911355
Alignment:
Q  119 gcagcctgattttttgcagaatcaccaatcaacctttgatcatc 162  Q
    ||||||||||| || |||| ||||||||||||||||||||||||    
T  28911312 gcagcctgattcttagcagcatcaccaatcaacctttgatcatc 28911355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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