View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_high_48 (Length: 266)
Name: NF7750_high_48
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_high_48 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 266
Target Start/End: Original strand, 26130623 - 26130877
Alignment:
| Q |
12 |
aatatgttgaaactgtgaaaatataccacgtagacatttcgtggcattctgtaattttaagaagcattgatcttttcataatagaccgaaacatgacaaa |
111 |
Q |
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| T |
26130623 |
aatattttgaaactgtgaaaatataccacgtagacatttcgtggcattctgtcattttaagaagcattgatcttttcataatagaccgaaacatgacaaa |
26130722 |
T |
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| Q |
112 |
tatctcctttgtgaactgaatttctgccgatttctccagtgatcgcaaactagtctgcatcattggttgaccatattttgataggaaatcagatttaatt |
211 |
Q |
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| T |
26130723 |
tatctcctttgtgaactgaatttctgccgatttctccagtgatcgcaaactagtttgcatcattggttgaccatattttgataggaaatcagatttaatt |
26130822 |
T |
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| Q |
212 |
tccctaaaccgaaaatatgtaagacatttatgaaattgttgaacaaaatcagtca |
266 |
Q |
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| T |
26130823 |
tccctaaaccgaaaatatgtaagacatttatgaaattgttgaacaaaatcagtca |
26130877 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 21428577 - 21428491
Alignment:
| Q |
177 |
gttgaccatattttgataggaaatcagatttaatttccctaaaccgaaaatatgtaagacatttatgaaattgttgaacaaaatcag |
263 |
Q |
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|||||||||| || || |||||||||||| ||||| ||||||||||||||| |||||||| |||| |||||||||||||| |||| |
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| T |
21428577 |
gttgaccatagttggaatggaaatcagattcaattttcctaaaccgaaaataggtaagacacctatggaattgttgaacaaagtcag |
21428491 |
T |
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