View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_high_58 (Length: 237)
Name: NF7750_high_58
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_high_58 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3316666 - 3316442
Alignment:
| Q |
1 |
aacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgcaatcccggtgcattagtactaagcttcataactctacctgatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316666 |
aacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgcaatcccggtgcattagtactaagcttcataactctacctgatttc |
3316567 |
T |
|
| Q |
101 |
ttatccataactatagctgcaacctttaatccttctttgttctctaattttcccttattaagcacataattaacgttgtaaccattagttttttgtaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316566 |
ttatccataactatagctgcaacctttaatccttctttgttctctaattttcctttattaagcacataattaacgttgtaaccattagttttttgtaatt |
3316467 |
T |
|
| Q |
201 |
gattaattcttgcaccaacaatttg |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3316466 |
gattaattcttgcaccaacaatttg |
3316442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3323976 - 3323752
Alignment:
| Q |
1 |
aacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgcaatcccggtgcattagtactaagcttcataactctacctgatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
3323976 |
aacaaaccctccttttcccttatcattcttcacaaaattagcactataaaattgcaatccaggagcattagtactaagcttcataactctccctgatttc |
3323877 |
T |
|
| Q |
101 |
ttatccataactatagctgcaacctttaatccttctttgttctctaattttcccttattaagcacataattaacgttgtaaccattagttttttgtaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| | |||||||| |||||| |||||| |
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| T |
3323876 |
ttatccataactatagctgcaacctttaatccttcttttttctctaattttcctttattaagcacatagttaatatcataaccatttgtttttggtaatt |
3323777 |
T |
|
| Q |
201 |
gattaattcttgcaccaacaatttg |
225 |
Q |
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|||||||||||| |||||||||||| |
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| T |
3323776 |
gattaattcttgtaccaacaatttg |
3323752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 18635485 - 18635543
Alignment:
| Q |
23 |
tcattcttcacaaaattagcactataaaattgcaatcccggtgcattagtactaagctt |
81 |
Q |
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||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
18635485 |
tcattattcacaaacttagcactataaaattacaatccagaagcattagtactaagctt |
18635543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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