View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_high_7 (Length: 531)
Name: NF7750_high_7
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 48545722 - 48546222
Alignment:
| Q |
1 |
aggatccttgcaatggtacctccatggacacgtgtttatagagttcagcgggatattccaatgcctttggtgacctctggggttgagaaagggaatctaa |
100 |
Q |
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| T |
48545722 |
aggatccttgcaatggtacctccatggacacgtgtttatagagttcagcgggatattccaatgcctttggtgacctctggggttgagaaagggaatctaa |
48545821 |
T |
|
| Q |
101 |
gggagttagcattagctcgaatggaagacttgggtttaaaatgtcgtgatgttcgcaccagagaagctggaatccaggtaattatctagaaccaatctcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48545822 |
gggagttagcattagctcgaatggaagacttgggtttaaaatgtcgtgatgttcgcaccagagaagctggaatccaggtaattatctagaaccaatcttg |
48545921 |
T |
|
| Q |
201 |
tctggaaattttatttaactaagatttttaaatcttgacacactttgttaaccagtattattttggagcaccaaccgacattctgtgtttctttgtagga |
300 |
Q |
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| T |
48545922 |
tctggaaattttatttaactaagatttttaaatcttgacacactttgttaaccagtattattttggagcaccaaccgacattctgtgtttctttgtagga |
48546021 |
T |
|
| Q |
301 |
tattcatcaccaaattaaaccagaagaggtggaacttgttcgtcgtgattatatggcaaatgaaggttgggaaacatttttgtcatatgaagatacacgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48546022 |
tattcatcaccaaattaaaccagaagaggtggaacttgttcgtcgtgattatatggcaaatgaaggttgggaaacatttttgtcatacgaagatacacgg |
48546121 |
T |
|
| Q |
401 |
caggtgattttaccttctttcctcagcctctcttattagtgcctgtccttttgtctatcatcattttctactttgagttgtaacgtgtgagtctagtttg |
500 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48546122 |
caggtgattttaccttctttcctcagcctctcttaatagtgcctgtccttttgtctatcatcattttctactttgagttgtaacgtgtgagtctagtttg |
48546221 |
T |
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| Q |
501 |
t |
501 |
Q |
| |
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| T |
48546222 |
t |
48546222 |
T |
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