View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_1 (Length: 807)
Name: NF7750_low_1
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 11 - 791
Target Start/End: Original strand, 33339189 - 33339962
Alignment:
| Q |
11 |
cagagacaatgatttgattgactccttgtactgatcaagtcattctaaccaaggtgttcaagcagcgtatcccattgatggagtacaacgacgttgcaag |
110 |
Q |
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| T |
33339189 |
cagagacaatgatttgattgactccttgtaccgatcaagtcattctaaccaaggtgttcaagcagcgtatccaattgatggagtacaacgacgatgcaag |
33339288 |
T |
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| Q |
111 |
taaatatggatgaaaaaacttcaagttgaggggtgcgtacccaacttagtgatgaattcacactttagggagagattgttggtatatgaagtgtgagtaa |
210 |
Q |
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| T |
33339289 |
taaacatggatgaaaaaacttcaagttgaggggtgcgtacccaacttagtgatgaattcacactttagggagagattgttggtatatcaag-------aa |
33339381 |
T |
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| Q |
211 |
aagtcacctgttggatgaaaaatgaatgttgaacacttcataagtgaaagatcatatatctactgtcttaaagtttggagtggctgtgtgtggtcactct |
310 |
Q |
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| T |
33339382 |
aagtcacatgttagatgaaaaatgaatgttgaacacttcataagtgaaagatcatatatctactgtcttaaagtttggagtggctgtgtgtggtcactct |
33339481 |
T |
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| Q |
311 |
aatacggagttcttacctgttagttagtgataactgtactctccctgtacatatttcgcttatataatgattattaattcttgaatatgattcatgtata |
410 |
Q |
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| T |
33339482 |
aatacggagttcttacttgttagttagtgataactgtactctctttatacatatttcgcttatataatgattattaattcttgaatatgattcatgtata |
33339581 |
T |
|
| Q |
411 |
ggtggtcactaattgctgggaggttgcctggacgtacggataatgaagttaagaacttttggaactctcatataagnnnnnnnttgattaagaagggtat |
510 |
Q |
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| T |
33339582 |
ggtggtcactaattgctgggaggttgcctggacgtacggataatgaagttaagaacttttggaactctcatataagaaaaaaattgattaagaagggtat |
33339681 |
T |
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| Q |
511 |
tgatccaaataatcacggtttaaaccacaaaatccctccccttcaaaacccaatcatgtctaatagttcaaaatcttttggcttgaaagacattattagt |
610 |
Q |
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| T |
33339682 |
tgatccaaataatcacggtttaaaccacaaaatccctccccttcaaaacccaatcatgtctaatagttcaaaatcttttggcttgaaagacattattagt |
33339781 |
T |
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| Q |
611 |
aagaataggacaagtaaaacccatgttgacaattatggtgaagtaatctcaaatgctgcaaaaggcaaggatgactcgtatgcccaattgttggatttaa |
710 |
Q |
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| T |
33339782 |
aagaataggacaagtaaaacccatgttgacaattatggtgaagtaatctcaaatgctgcaaaaggcaaggatgactcgtatgcccaattgttggatttaa |
33339881 |
T |
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| Q |
711 |
accttgatctctcactatgaacactccttcaccatcacctatagttgtattgctgaaaacaataattgatcgtgaatttaa |
791 |
Q |
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| T |
33339882 |
accttgatctctcactatgaacactccttcaccatcacctatagttgtattgctgaaaacaataattgatcgtgaatttaa |
33339962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 34067167 - 34067093
Alignment:
| Q |
409 |
taggtggtcactaattgctgggaggttgcctggacgtacggataatgaagttaagaacttttggaactctcatat |
483 |
Q |
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| T |
34067167 |
taggtgggcactcatagctggaaggttgcctggacgtacagataatgaggtgaaaaactattggaattctcatat |
34067093 |
T |
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