View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_10 (Length: 520)
Name: NF7750_low_10
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 38323091 - 38322605
Alignment:
| Q |
19 |
aacatagtctaccatttctgatgaagatattaatgccaatttttcctccttgtttcgaaaactagaatttaaagtagaaagtagcttaggaaaatctacc |
118 |
Q |
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| T |
38323091 |
aacatagtctatcatttctgatgaagatattaatgccaatttttcctccttgtttcgaaaactagaatttaaagtagaaagtagcttaggaaaatctacc |
38322992 |
T |
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| Q |
119 |
tctactactttctctactttactttggataggatatctcatgatatattgaggatattgctgaacaattgacacaattgtagaagaatcatcgatgcttg |
218 |
Q |
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| T |
38322991 |
tctactactttctctactttactttggataggatatctcatgatatattgaggatattgctgaacaattgacacaattgtagaagaatcatcgatgcttg |
38322892 |
T |
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| Q |
219 |
atttggaaagattatcacaagattcacatggtttagaaactctttctatcacttcaatctctgaaggatggactttagattctgaaattgaggcatttat |
318 |
Q |
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| T |
38322891 |
atttggaaagattatcacaagattcacatggtttagaaactctttctatcacttcaatctctgaaggatggactttagattctgaaattgaggcatttat |
38322792 |
T |
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| Q |
319 |
ttgagcatcactttcgacaagtcgatatcctttgttttctttcagctgcacaaatacattcaacattatttgctactattaattaataagatcataagtt |
418 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322791 |
ttgagcattactttcgacaagtcgatatcctttgttttctttcagctgcacaaatacattcaacattatttgctactattaattaataagatcataagtt |
38322692 |
T |
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| Q |
419 |
cataaatatgattacattgaccatttagtatagaaaaatgaacctgcactttttgccaatcagggttgtactttatggctaacacat |
505 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322691 |
cataaatatgattacattgaccatatagtatagaaaaatgaacctgcactttttgccaatcagggttgtactttatggctaacacat |
38322605 |
T |
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