View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_12 (Length: 480)
Name: NF7750_low_12
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 258
Target Start/End: Original strand, 4324038 - 4324286
Alignment:
| Q |
10 |
gtgagatgaatgatgcgcgagtgtcttctcctcggaaactcaaaaacacgtcatacttttttgttagagccaaatcgttctcaaatggagtgaggttcag |
109 |
Q |
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| T |
4324038 |
gtgaaatgaatgatgcgcgagtgtcttctcctcggaaactcaaaaacacgtcatacttttttgttagagccaaatcgttctcaaatggagtgaggttcag |
4324137 |
T |
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| Q |
110 |
atcaagaagcagtgtccttcttctctgtaaatcatatgaagaggaacttgttgggtaagacatggatgaatgatttgtggtttcgaaacagtaaggaaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4324138 |
atcaagaagcagtgtccttcttctctgtaaatcatatgaagaggaacttgttgggtaagacatggatgaatgatttgtggtttcgaaacactaaggaaaa |
4324237 |
T |
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| Q |
210 |
gaaaggaagagatctatggagttgggaagtgctctgttcaaagacttgc |
258 |
Q |
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| T |
4324238 |
gaaaggaagagatctatggagttgggaagtgctctgttcaaagacttgc |
4324286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 4324334 - 4324447
Alignment:
| Q |
258 |
ctgtcagggattccaccacagttgatttattgaataattgtaaatttattcaatcaacttaaaaaagtgaatttatctttagttgaacaagaaagttcaa |
357 |
Q |
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| T |
4324334 |
ctgtcagggattccaccacagttgatttattgaataattgtaaatttattcaatcaacttaaaaaagtgaatttatctttagttgaacaagaaagttcaa |
4324433 |
T |
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| Q |
358 |
ctcaaaaatgacaa |
371 |
Q |
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| T |
4324434 |
ctcaaaaatgacaa |
4324447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 4356643 - 4356585
Alignment:
| Q |
16 |
tgaatgatgcgcgagtgtcttctcctcggaaactcaaaaacacgtcatacttttttgtt |
74 |
Q |
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| T |
4356643 |
tgaatgatgctctagtgtcttctcctctaaaactcaaaaacacatcgtactttcttgtt |
4356585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 4332540 - 4332488
Alignment:
| Q |
16 |
tgaatgatgcgcgagtgtcttctcctcggaaactcaaaaacacgtcatacttt |
68 |
Q |
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|||||||||||||||||||||| |||| |||||||| ||||| || |||||| |
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| T |
4332540 |
tgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatcgtacttt |
4332488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 25951828 - 25951861
Alignment:
| Q |
25 |
cgcgagtgtcttctcctcggaaactcaaaaacac |
58 |
Q |
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| T |
25951828 |
cgcgagtatcttctcctcggaaactcaaaaacac |
25951861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 25961079 - 25961112
Alignment:
| Q |
25 |
cgcgagtgtcttctcctcggaaactcaaaaacac |
58 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
25961079 |
cgcgagtatcttctcctcggaaactcaaaaacac |
25961112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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