View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7750_low_15 (Length: 461)
Name: NF7750_low_15
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 2801166 - 2800880
Alignment:
| Q |
20 |
aattgctttatgtagtattgctgagttaggaagagtccaatggaagtaggaatagatttaacacctaata---gagttgatggaccatgatcctttaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2801166 |
aattgctttatgtagtattgctgagttaggaagagtccaatggaagtaggaatagatttaatacctaataagagagttgatggaccatgatcctttaaaa |
2801067 |
T |
|
| Q |
117 |
agagaattcggcagcaactcaggaattggtttcttgaacttttacagaaagttagagtattccacatggcagctggtcatctacgtatattagaaaatat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2801066 |
agagaattcggcagcaactcaggaattggtttcttaaacttttacagaaatttagagtattccacatggcagctggtcatctacgtatattagaaaatat |
2800967 |
T |
|
| Q |
217 |
gcagtgatgaaaaccactgtagatgaagagcgaagtgtctgactttgaatttataagtaaataattggc-gaggattaaataaatat |
302 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2800966 |
gcagtgatgaaacccactgtagatgaagagcgaagtgtctgactttgaatttataagtaaataattggctgaggattaaataaatat |
2800880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 2800575 - 2800521
Alignment:
| Q |
390 |
ttttgattgattattacaagggttggagaaaagctcccaccaatctgaaacacca |
444 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2800575 |
ttttaattgattattacaagggttggagaaaagctcccaccaatctgaaacacca |
2800521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 2834925 - 2835032
Alignment:
| Q |
335 |
gatagtagcggcgatctaggttagcaacataaaaatattcgttcaaatgaagaagttttgattg--attattacaagggttggagaaaagctcccaccaa |
432 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||| |||| |||||| ||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
2834925 |
gatagtagcatcgatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattacaagggttgaaggaaagctcccaccaa |
2835024 |
T |
|
| Q |
433 |
tctgaaac |
440 |
Q |
| |
|
||| |||| |
|
|
| T |
2835025 |
tcttaaac |
2835032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 2810222 - 2810133
Alignment:
| Q |
192 |
gtcatctacgtatattagaaaatatgcagtgatgaaaaccactg--tagatgaagagcgaagtgtctgactttgaatttataagtaaata |
279 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||| ||| | || ||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
2810222 |
gtcatctacatattttagaaaatatgcagcgattaaaccttatgcgtagatgaagagcgaagtgtatgactttgaatttataaataaata |
2810133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 2834621 - 2834665
Alignment:
| Q |
246 |
gcgaagtgtctgactttgaatttataagtaaataattggcgagga |
290 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
2834621 |
gcgaagtgtctgactttgaatttttaaataaatagttggcgagga |
2834665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University