View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_16 (Length: 456)
Name: NF7750_low_16
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_16 |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 53 - 439
Target Start/End: Original strand, 30894742 - 30895127
Alignment:
| Q |
53 |
agagtcttaaggagaatgaagaattaaactttgacccaactagtattgattggacaaagtacatgatgaatacacacattcctagcattgtcaagtatgc |
152 |
Q |
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| T |
30894742 |
agagtcttaaggagaatgaagaattaaactttgacccaactagtattgattggacaaactacatgatgaatacacacattcctagcattgtcaagtatgc |
30894841 |
T |
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| Q |
153 |
aatgaaataatttccaaatcatattgttgtttcaaaatgcctagacactgctctggtttagaacttaatgtttgaataaaataaaaaatggtttgtgtga |
252 |
Q |
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| T |
30894842 |
aatgaaataatt-ccaaatcatattgttgtttcaaaatgcctagacactgctctggtttagaacttaatgtttgaataaaataaaaaatggtttgtgtga |
30894940 |
T |
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| Q |
253 |
aggagtggaatataaaagtgataaattttatagccttgcacaatgtaatcttttgttagaaatttgtctatgatgtttgtacctaaatttgttaagaact |
352 |
Q |
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| T |
30894941 |
aggagtggaatataaaagtgataaattttatagccttgcacaatgtaatcttttgttagaaatttgtctatgatgtttgtacctaaatttgttaagaact |
30895040 |
T |
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| Q |
353 |
ttgttgttttgggtgcaagaacggtggttaactcgtgttgtttgtaagatgtggatcattgaagtagtaatgttgcagtcttgactg |
439 |
Q |
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| T |
30895041 |
ttgttgttttgggtgcaagaacggtggttaactcgtgttgtttgtaagatgtggatcattgaagtagtaatgttgcagtcttgactg |
30895127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 30898570 - 30898676
Alignment:
| Q |
67 |
aatgaagaattaaactttgacccaactagtattgattggacaaagtacatgatgaatacacacattcctagcattgtcaagtatgcaatgaaataatttc |
166 |
Q |
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| T |
30898570 |
aatggagaattagactttgaccccactaatattgattggacaaactatatgatgaatacacacattcctagcctagtcaagtatgctacgaagtaatatc |
30898669 |
T |
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| Q |
167 |
caaatca |
173 |
Q |
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|||||| |
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| T |
30898670 |
taaatca |
30898676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 19891921 - 19891837
Alignment:
| Q |
82 |
tttgacccaactagtattgattggacaaagtacatgatgaatacacacattcctagcattgtcaagtatgcaatgaaataatttc |
166 |
Q |
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| T |
19891921 |
tttgaccccattagcattaattggacaaactacatgatgaatactcacattcctggtcttgtcaagtatgcaatgaagtaatttc |
19891837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 19535224 - 19535318
Alignment:
| Q |
82 |
tttgacccaactagtattgattggacaaagtacatgatgaatacacacattcctagcattgtcaagtatgcaatgaaataatttccaaatcatat |
176 |
Q |
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| T |
19535224 |
tttgacccgattagcattaattggacaaactacatgatgaatacgcacattcctggtctcgtcaagtatgcaatgaaataatttcaaaattatat |
19535318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 19881114 - 19881182
Alignment:
| Q |
63 |
ggagaatgaagaattaaactttgacccaactagtattgattggacaaagtacatgatgaatacacacat |
131 |
Q |
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| T |
19881114 |
ggagaatgaagaatttaactttgatccaactagcattgattggacagactatatgatgaatacacacat |
19881182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 19664171 - 19664242
Alignment:
| Q |
64 |
gagaatgaagaattaaactttgacccaactagtattgattggacaaagtacatgatgaatacacacattcct |
135 |
Q |
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| T |
19664171 |
gagaatgaagcattgaactttgaccccactagcattgattggacagactatatgatgaatacacacattcct |
19664242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 7251 - 7323
Alignment:
| Q |
63 |
ggagaatgaagaattaaactttgacccaactagtattgattggacaaagtacatgatgaatacacacattcct |
135 |
Q |
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| T |
7251 |
ggagaatgaagaatttaactttgatccaactagcattgactggatggactatatgatgaacacacacattcct |
7323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 11915500 - 11915572
Alignment:
| Q |
63 |
ggagaatgaagaattaaactttgacccaactagtattgattggacaaagtacatgatgaatacacacattcct |
135 |
Q |
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| T |
11915500 |
ggagaatgaagaatttaactttgatccaactagcattgactggatggactatatgatgaacacacacattcct |
11915572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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