View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_18 (Length: 446)

Name: NF7750_low_18
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_18
NF7750_low_18
[»] chr5 (13 HSPs)
chr5 (30-436)||(3380566-3380972)
chr5 (21-291)||(2904585-2904858)
chr5 (18-267)||(2856466-2856715)
chr5 (18-267)||(2874076-2874325)
chr5 (18-267)||(2844639-2844888)
chr5 (291-370)||(8867006-8867086)
chr5 (78-267)||(1599939-1600125)
chr5 (96-267)||(9074383-9074551)
chr5 (59-144)||(8529338-8529423)
chr5 (180-267)||(8644490-8644574)
chr5 (59-199)||(8641726-8641866)
chr5 (110-144)||(8535902-8535936)
chr5 (78-199)||(9003809-9003928)
[»] chr4 (1 HSPs)
chr4 (59-267)||(9443379-9443584)
[»] scaffold0627 (1 HSPs)
scaffold0627 (81-199)||(5012-5130)
[»] chr8 (1 HSPs)
chr8 (310-344)||(41718873-41718907)
[»] chr7 (1 HSPs)
chr7 (103-267)||(35780094-35780255)
[»] chr6 (1 HSPs)
chr6 (79-267)||(16716648-16716833)
[»] chr1 (1 HSPs)
chr1 (215-267)||(5131048-5131100)


Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 3380972 - 3380566
Alignment:
Q  30 aacaaacatgttagatgggccaaccgtttggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3380972 aacaaacatgttagatgggccaaccgtttggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatc 3380873  T
Q  130 ctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatatttgaagatggacaacaaaagtcaatgttgtgttt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3380872 ctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggacttcattggatcatatttgaagatggacaacaaaagtcaatgttttgttt 3380773  T
Q  230 tagttttgaaagtgataggatgcaatcatttccttctcacacatatgtttgatatcggaatacgtagaaaccggtaacaattttttaaaat-gaagtaat 328  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  3380772 tagttttgaaagtgagaggatgcaatgatttccttctc-cacatatgtttgatatcggaatacgtagaaactggtaacaatttttaaaaatagaagtaat 3380674  T
Q  329 tgaatgtaaacaaatgtgtcggtggtcttgttctctaaattacacacctaggcatgacagaaagattttggaaagaaaacaaaagaagggaattcaatga 428  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3380673 tgaatgtaaacaaatgtgccggtggtcttgttctctaaattacacacctaggcatgacagaaagattttggaaagaaaacaaaagaagggaattcaatga 3380574  T
Q  429 ctttcttc 436  Q
    ||||||||    
T  3380573 ctttcttc 3380566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 2904585 - 2904858
Alignment:
Q  21 ataatgtggaacaaacatgttagatgggccaaccgtttggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttg 120  Q
    ||||||||||| |||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  2904585 ataatgtggaataaacatgttagacgggccaacgatttggtgttcgagcgtctagtgcttgagatacacacgctcggaacaacatcatggagaaatcttg 2904684  T
Q  121 aagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatatttgaagatggacaacaaaagtcaat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||| |||||||||| ||||||||||||||    
T  2904685 aagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaatggcggattacattggatcatagttgaagatggtcaacaaaagtcaat 2904784  T
Q  221 gttgtgttttagttttgaaagtgataggatgcaatcatttccttctc--acacatatgttt-gatatcggaata 291  Q
     |||||||| |||||||||||||| ||||||||||||||||||||||   ||||||||||| ||||||||||||    
T  2904785 attgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttggatatcggaata 2904858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 2856466 - 2856715
Alignment:
Q  18 atcataatgtggaacaaacatgttagatgggccaaccgtttggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatc 117  Q
    |||||||||||||||||| |||||||| | | ||| ||||||||||| |||||||||||||| |||||||||||| |||||||| |||||| |||||||     
T  2856466 atcataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacatcatcatggagaaatg 2856565  T
Q  118 ttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatatttgaagatggacaacaaaagtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||| |||||||||| | | |||||||||||    
T  2856566 ttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtc 2856665  T
Q  218 aatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
    ||| |||||||| | |||||||||||| ||| |||| || ||||||||||    
T  2856666 aatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctc 2856715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 2874076 - 2874325
Alignment:
Q  18 atcataatgtggaacaaacatgttagatgggccaaccgtttggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatc 117  Q
    |||||||| ||||||||| |||||||| | | ||| ||||||||||| |||||||||||||| |||||||||||| |||||||| |||||| |||||||     
T  2874076 atcataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacaccatcatggagaaatg 2874175  T
Q  118 ttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatatttgaagatggacaacaaaagtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||| |||||||||| | | |||||||||||    
T  2874176 ttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcacttcattggattatatttgaagcttggcaacaaaagtc 2874275  T
Q  218 aatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
    ||| |||||||| | |||||||||||| ||| |||| || ||||||||||    
T  2874276 aatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctc 2874325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 2844639 - 2844888
Alignment:
Q  18 atcataatgtggaacaaacatgttagatgggccaaccgtttggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatc 117  Q
    |||||||||||||||||| |||||||| |   ||| ||||||||||| |||||||||||||| |||||||||||| | |||||| |||||| ||||||      
T  2844639 atcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgcttggaacaccatcatggagaaagg 2844738  T
Q  118 ttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatatttgaagatggacaacaaaagtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||| |||||||||   || |||||||||||    
T  2844739 ttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcacttcattggattatatttgaaacggggcaacaaaagtc 2844838  T
Q  218 aatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
    ||| |||||||| | |||||||||||| ||| |||| || ||||||||||    
T  2844839 aatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctc 2844888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 370
Target Start/End: Complemental strand, 8867086 - 8867006
Alignment:
Q  291 acgtagaaaccggtaacaattttttaaaat-gaagtaattgaatgtaaacaaatgtgtcggtggtcttgttctctaaatta 370  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  8867086 acgtagaaaccggtaacattttttaaaaatagaagtaattgaatgtaaacaaatgtgtcggtggccgtgttctctaaatta 8867006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 267
Target Start/End: Original strand, 1599939 - 1600125
Alignment:
Q  78 cttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcg 177  Q
    ||||||||| ||||  | |||||| |||| | ||||||| ||||||||||||||||||||||||||| || ||||  ||||||||| |||||||| || |    
T  1599939 cttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccacttgtgtgaatggtg 1600038  T
Q  178 gtcttcattggatcatatttgaagatggacaacaaaagtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
      ||||||||||| | || ||| | ||   | |||| |||||| |||  |||  ||||||||||||| ||| |||| |||||||||||||    
T  1600039 cacttcattggataagatatgagggtg---agcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctc 1600125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 267
Target Start/End: Original strand, 9074383 - 9074551
Alignment:
Q  96 ggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatat 195  Q
    |||||||||  || ||||||| ||||||||||||||||||||||||||||||  ||   | ||||||| |||||||| || |  ||||||||||| | ||    
T  9074383 ggaacaacaatattgagaaatgttgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtgtgaatggtgcacttcattggataagat 9074482  T
Q  196 ttgaagatggacaacaaaagtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
     |||| ||   || |||| |||||| |||| |||  ||||||||||||| ||| |||| |||||||||||||    
T  9074483 atgaaaat---cagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctc 9074551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 8529423 - 8529338
Alignment:
Q  59 ggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttt 144  Q
    |||||| ||||||||  | ||||||||| ||||  | ||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  8529423 ggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttcttttt 8529338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 8644574 - 8644490
Alignment:
Q  180 cttcattggatcatatttgaagatggacaacaaaagtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
    ||||||||||||| |||||| ||||   || ||| ||| || ||||||||  ||||||||||||| ||| ||||||||||||||||||    
T  8644574 cttcattggatcagatttgaggatg---aagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctc 8644490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 8641866 - 8641726
Alignment:
Q  59 ggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaat 158  Q
    |||||| ||||||||  | ||||||||| ||||  | ||| || |||||| ||||||| |||||||||||||||| |||||| ||| ||  |||  | ||    
T  8641866 ggtgtttgagcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtat 8641767  T
Q  159 cccacatgtgtgaacggcggtcttcattggatcatatttga 199  Q
    ||||| ||||||||  | | ||||||||| |||| ||||||    
T  8641766 cccacttgtgtgaatagtgttcttcattgaatcaaatttga 8641726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 144
Target Start/End: Complemental strand, 8535936 - 8535902
Alignment:
Q  110 gagaaatcttgaagtggatcctcaaatttcttttt 144  Q
    ||||||| |||||||||||||||||||||||||||    
T  8535936 gagaaatgttgaagtggatcctcaaatttcttttt 8535902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 9003928 - 9003809
Alignment:
Q  78 cttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcg 177  Q
    ||||||||||||||  | |||||| |||||| ||||||| ||||||||||||||||| | ||| ||| ||  |||    |||| || |||||||| ||||    
T  9003928 cttgagatacacac--tgggaacaccatcatggagaaatgttgaagtggatcctcaactgtctatttggagtcttaattatccgacttgtgtgaatggcg 9003831  T
Q  178 gtcttcattggatcatatttga 199  Q
      ||||||||||||| ||||||    
T  9003830 cacttcattggatcagatttga 9003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 267
Target Start/End: Complemental strand, 9443584 - 9443379
Alignment:
Q  59 ggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaat 158  Q
    |||||| ||||||||  | ||||||||| ||||  | ||||||||||| | ||||||| ||||||||||||||||||||||||||| ||  ||   | ||    
T  9443584 ggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtat 9443485  T
Q  159 cccacatgtgtgaacggcggtcttcattggatcatatttgaagatggacaacaaaagtcaatgttgtgttttagttttgaaagtgataggatgcaatcat 258  Q
    ||||| |||||||| || |  ||||||||||| | |||||| ||||   | |||| |||||| |||  |||  | ||||||||||| ||| |||| ||||    
T  9443484 cccacttgtgtgaatggtgcacttcattggataagatttgaggatg---agcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcat 9443388  T
Q  259 ttccttctc 267  Q
    |||||||||    
T  9443387 ttccttctc 9443379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 5130 - 5012
Alignment:
Q  81 gagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtc 180  Q
    |||||||||||  |||||||| || ||| ||||||| |  | ||||||||||||||||| ||||     ||| |||||||||| |||||||| || |  |    
T  5130 gagatacacacactcggaacatcaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatggtgcac 5031  T
Q  181 ttcattggatcatatttga 199  Q
    |||||||||||| ||||||    
T  5030 ttcattggatcagatttga 5012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 41718873 - 41718907
Alignment:
Q  310 ttttttaaaatgaagtaattgaatgtaaacaaatg 344  Q
    |||||||||||||||||||||||||||| ||||||    
T  41718873 ttttttaaaatgaagtaattgaatgtaatcaaatg 41718907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 267
Target Start/End: Complemental strand, 35780255 - 35780094
Alignment:
Q  103 catcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcggtcttcattggatcatatttgaaga 202  Q
    |||||| ||||| | |||||||||||||||  |||||| |||  |  |||  | ||||||| |||||||| || |  ||||| ||||||| |||||| |     
T  35780255 catcatggagaactgttgaagtggatcctcgtatttctatttcaagccttaagtatcccacttgtgtgaatggtgtgcttcactggatcaaatttgagg- 35780157  T
Q  203 tggacaacaaaagtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
      | |||||||||||||| || |||||| |||||||| |||| ||| ||||  ||||||||||||    
T  35780156 --ggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggttgcagccatttccttctc 35780094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 267
Target Start/End: Complemental strand, 16716833 - 16716648
Alignment:
Q  79 ttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcgg 178  Q
    |||||||||||||  |||||||| || ||| ||||||| |  | ||||||||||||||||| ||||     ||| |||||||||| |||||||| || |     
T  16716833 ttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctcaaatttcattttcatgtcttatgaatcccacttgtgtgaatggtgc 16716734  T
Q  179 tcttcattggatcatatttgaagatggacaacaaaagtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
     ||||||||| ||| ||||   || |||    ||| ||| || ||||||||| ||||||||||||| | | |||| |||||||||||||    
T  16716733 acttcattggttcacattt---gagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatttccttctc 16716648  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 5131100 - 5131048
Alignment:
Q  215 gtcaatgttgtgttttagttttgaaagtgataggatgcaatcatttccttctc 267  Q
    |||| |||||||||| |||||||||||||| ||  |||||||||| |||||||    
T  5131100 gtcattgttgtgtttcagttttgaaagtgagagattgcaatcattcccttctc 5131048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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