View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_19 (Length: 446)
Name: NF7750_low_19
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 2226069 - 2225638
Alignment:
| Q |
1 |
cacacagtcagtggcgtggtgtatctaagaccttgagttaggggggaaaacttttgagtaaattcgcctcatgaaactgtaggagtccaacatttacacc |
100 |
Q |
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| T |
2226069 |
cacacagtcagtggcgtggtgtatctaagaccttgagttagggggaaaaacttttgagtaaattcgcctcatgaaactgtaggagtccaacatttacacc |
2225970 |
T |
|
| Q |
101 |
catgaaatttgcaaatggaaaataaaaaccttgattttgaattgtattgaacaacttggtccttctcctaacttgtatctactctacggccaaatttgtt |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| |
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| T |
2225969 |
catgaaatttgcaaatggaaaataaaaactttgattttgaattgtattgaacaacttggtccttctcctaacttgtatctaatctacggtcaaaattgtt |
2225870 |
T |
|
| Q |
201 |
tcagaattatggcactgacaaataaattagtcattgagttatatcccttattgtcaaattgatccgcccctacacacagataattaatagtttgagaaaa |
300 |
Q |
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| T |
2225869 |
tcagaattatggcactgacaaataaattagtcattgagttatatcgcttattgtcaaattgatccgcccctacacacagataattaatagtttgagaaaa |
2225770 |
T |
|
| Q |
301 |
ttgaatagttaaatatggtcacatgtgtcggcgtggtgtcgggcttggtattgtgtatactgacttaccaacacatgtttcaatccggagacaccttcaa |
400 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
2225769 |
ttgaatagttgaatatggtcaaatgtgtcggcgtggtgtcgggcttggtattgtgtatactgacttaccaacacatgtttcactccggagacgccttcaa |
2225670 |
T |
|
| Q |
401 |
tcttacttaagtgttggtgctacattgtttat |
432 |
Q |
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| T |
2225669 |
tcttacttaagtgttggtgctacattgtttat |
2225638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 279 - 380
Target Start/End: Complemental strand, 2218489 - 2218388
Alignment:
| Q |
279 |
gataattaatagtttgagaaaattgaatagttaaatatggtcacatgtgtcggcgtggtgtcgggcttggtattgtgtatactgacttaccaacacatgt |
378 |
Q |
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||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || ||||| || ||||| |||||||||||||||||||| ||||||| |
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| T |
2218489 |
gataagtaatagtttgagagaattgaatagttgaatatggtcacatgtgtcggtgttgtgtcagggttggtgttgtgtatactgacttaccatcacatgt |
2218390 |
T |
|
| Q |
379 |
tt |
380 |
Q |
| |
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|| |
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| T |
2218389 |
tt |
2218388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 10241145 - 10241032
Alignment:
| Q |
134 |
attttgaattgtattgaacaacttggtccttctcctaacttgtatctactctacggcc--aaatttgtttcagaattatggcactgacaaataaattagt |
231 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||| | | | ||||| | ||||| || || |||||| ||||| |||||||||||||| |
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| T |
10241145 |
attttgaattatattgaacaacttggtccttctgctaacttgtgtgttatttacggtcaaaaattagtaacaaaattattgcacttacaaataaattagt |
10241046 |
T |
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| Q |
232 |
cattgagttatatc |
245 |
Q |
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| T |
10241045 |
ctttgagttatatc |
10241032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 22771585 - 22771660
Alignment:
| Q |
105 |
aaatttgcaaatggaaaataaaaaccttgattttgaattgtattgaacaacttggtccttctcctaacttgtatcta |
181 |
Q |
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|||||||||||| ||||| ||||| | ||||||||||| | |||| |||||| ||||||| |||||||||||||| |
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| T |
22771585 |
aaatttgcaaatagaaaaaaaaaatccagattttgaattatgttgagcaactttgtccttc-actaacttgtatcta |
22771660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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