View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_20 (Length: 443)
Name: NF7750_low_20
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 48623399 - 48622983
Alignment:
| Q |
1 |
tttcattgcctttctctgtcnnnnnnntatgttaattcttcgtctttctaacagcaaatggacaatgacgtaatttattagcaaacctgtcacttcnnnn |
100 |
Q |
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| T |
48623399 |
tttcattgcctttctctgtcaaaaaaatatgttaattcttcgtctttctaacagcaaatggacaatgacgtaatttattagcaaacctgtcactt----- |
48623305 |
T |
|
| Q |
101 |
nnnnnnnnnnnngaataaagcaaacctgtcacatattcatcatatactaaatccaaaacggaccgcaggagatccttcttcaaataagcatatatcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48623304 |
ttttttttttttgaataaagcaaacctgtcacatattcatcatatactaaatccaaaacggaccgcaggagatccttcttcaaataagcatatatcttct |
48623205 |
T |
|
| Q |
201 |
tttacgagtatatactctttccccagactatattttttgtagaaaaaagtaaaagcttgggaaacttggtgtaaaaactatacgaatactttattctcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48623204 |
tttacgagtatatactctttccccagactatattttttgtagaaaaaagaaaaagcttgggaaacttggtgtaaaaactatacgaatactttagtctcat |
48623105 |
T |
|
| Q |
301 |
gcaatcaatgtaacgattattattatattccgacaaaataaataaaacgaagtttatcgggcatcaaacagattataaacggtatattgtggtagaagtg |
400 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |
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| T |
48623104 |
gcattcaatgtaacgatta---ttatattccgacaaaataaataaaacgaagtttatcgtgcatcaaaccgattataaacagtatattgtggtagaagtg |
48623008 |
T |
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| Q |
401 |
taattcagtttgttggagtagttta |
425 |
Q |
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||||||||||||||||||||||||| |
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| T |
48623007 |
taattcagtttgttggagtagttta |
48622983 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 38653461 - 38653429
Alignment:
| Q |
393 |
tagaagtgtaattcagtttgttggagtagttta |
425 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
38653461 |
tagaagtgtaattcagtttgttagagtagttta |
38653429 |
T |
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