View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_24 (Length: 428)

Name: NF7750_low_24
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_24
NF7750_low_24
[»] chr3 (10 HSPs)
chr3 (12-412)||(51942007-51942393)
chr3 (64-396)||(5155224-5155554)
chr3 (70-395)||(46478252-46478575)
chr3 (42-223)||(4582497-4582678)
chr3 (287-396)||(46550107-46550216)
chr3 (319-395)||(46469899-46469975)
chr3 (278-352)||(47398186-47398260)
chr3 (315-352)||(46490237-46490274)
chr3 (322-396)||(47414786-47414860)
chr3 (51-104)||(4614280-4614333)
[»] chr8 (2 HSPs)
chr8 (51-397)||(9677463-9677807)
chr8 (53-395)||(9693206-9693546)
[»] chr4 (4 HSPs)
chr4 (69-380)||(35160480-35160789)
chr4 (318-395)||(35154336-35154413)
chr4 (51-223)||(35154071-35154243)
chr4 (136-194)||(15555098-15555156)
[»] chr2 (3 HSPs)
chr2 (299-352)||(20143699-20143752)
chr2 (299-352)||(20169758-20169811)
chr2 (64-172)||(20154380-20154488)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 51942007 - 51942393
Alignment:
Q  12 tcgtaagaacaatgtctcttcatgatcaacccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 111  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942007 tcgtaagaacaatgtctctccatgaccaacc-aaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttt 51942105  T
Q  112 tcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactg 211  Q
    |||| |||||| ||||||| ||||||||||||             ||| || ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51942106 tcgccattgtctctgcaagttgtgctcagcat-------------tctgattgtcccacaccgcagcaacttctcgacttcctacgatccaaatcaactg 51942192  T
Q  212 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcacctctccttcgccgatggtgtatgg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51942193 atcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgcttctgccggtggacctcacctctccttcgtcgatggtgtatgg 51942292  T
Q  312 atagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttcatgttcaaggtatata 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51942293 atagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttcatgttcaaggtatata 51942392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 64 - 396
Target Start/End: Original strand, 5155224 - 5155554
Alignment:
Q  64 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 163  Q
    |||||||||||| ||||||  ||| ||| ||| || ||||| || ||||||| | |||| || |||| ||| || ||||| ||||||||||||||| | |    
T  5155224 atcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagg 5155323  T
Q  164 gtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgac 263  Q
    |||||||||  || || ||||| |||||||| |  |||||||| ||||| ||||||||| | || ||||| || ||||||||| |   ||||||| ||||    
T  5155324 gtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtc--gtgctcttcgac 5155421  T
Q  264 gctgcttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctg 363  Q
    |||||| |  | ||||||||||   ||||||||| | ||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||| ||||    
T  5155422 gctgctcccacaggtggacctcgattctccttcgtcaatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctctg 5155521  T
Q  364 actataaggccactttggcttccgttgatttca 396  Q
    | |||||||||||||||  ||| ||||||||||    
T  5155522 attataaggccactttgctttctgttgatttca 5155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 395
Target Start/End: Original strand, 46478252 - 46478575
Alignment:
Q  70 aaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccca 169  Q
    |||||| | ||||| ||| ||||||| ||||||||||| ||||| | | | || || |||| |||||| || || |||||| |||| ||| | |||||||    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  170 cacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgacgctgct 269  Q
    | |  || |||||| |  ||||||| | ||||||||| || ||||||||||||||| |||| |||||||| |||||  |  |   |||||||||||| ||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttcacagctcgtttccgtcatc--ctctccgacgcttct 46478449  T
Q  270 tctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactata 369  Q
     | |||||||| |||| |||||| |||| ||| ||||| ||| | ||  |||||||||||||||||||||||||| |||||||| ||||  || | | ||    
T  46478450 cccgccggtggtcctctcctctctttcgtcgacggtgtttgggttgatcaaaccctttctcttcaaccttccttccaacaaatcgtgtccactcatttta 46478549  T
Q  370 aggccactttggcttccgttgatttc 395  Q
    | ||  ||||| ||||||||||||||    
T  46478550 aagcagctttgtcttccgttgatttc 46478575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 4582678 - 4582497
Alignment:
Q  42 ccaaacacgagtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagc 141  Q
    |||||||  |||||||||||||||||||||| || | ||||||||| ||||||| || ||||| || ||||| | | | || || |||| || |||||||    
T  4582678 ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc 4582579  T
Q  142 atgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 223  Q
    |||||||||||||||||| | || |||||| |  | || ||||| |||||||| |  |||||||||||||||||||||||||    
T  4582578 atgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaact 4582497  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 46550216 - 46550107
Alignment:
Q  287 cctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttcc 386  Q
    |||||| |||| | ||||||  ||||| ||| |||||||||||||||||||||||||  || |||  ||| |  |||| ||||||||||||||||||||     
T  46550216 cctctctttcgtcaatggtgcgtggattgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccactttggcttca 46550117  T
Q  387 gttgatttca 396  Q
    ||||||||||    
T  46550116 gttgatttca 46550107  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 46469899 - 46469975
Alignment:
Q  319 aaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttc 395  Q
    ||||||||||||||||||||||||||||| |||  |||    |||| ||||| ||||||||||||||||||||||||    
T  46469899 aaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccactttggcttccgttgatttc 46469975  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 47398260 - 47398186
Alignment:
Q  278 tggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 352  Q
    |||||||| |||||| |||| | |||| || ||| | ||| ||||||||||||||||||||||||||||||||||    
T  47398260 tggacctcgcctctctttcgtcaatggcgtgtgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 47398186  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 46490237 - 46490274
Alignment:
Q  315 gaaaaaaccctttctcttcaaccttccttcaaacaaat 352  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46490237 gaaaaaaccctttctcttcaaccttccttcaaacaaat 46490274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 396
Target Start/End: Complemental strand, 47414860 - 47414786
Alignment:
Q  322 ccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttca 396  Q
    ||||||||||| |||||||||||||||||||| | |   |||| ||||||||| ||||| ||||||| |||||||    
T  47414860 ccctttctcttaaaccttccttcaaacaaatcgtctatcctgattataaggccgctttgtcttccgtagatttca 47414786  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 4614333 - 4614280
Alignment:
Q  51 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacat 104  Q
    ||||||||||||||||||||||||| | ||||||||| ||||||| || |||||    
T  4614333 agtttccctcagaatcgccaaacatcttttctcaaaagaatcagagaagaacat 4614280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 397
Target Start/End: Complemental strand, 9677807 - 9677463
Alignment:
Q  51 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 150  Q
    |||||||||||   ||||||||||| | ||||||||| ||||||| |||||| |||||||||| | |||||| || |||| ||| ||||| || ||||||    
T  9677807 agtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgct 9677708  T
Q  151 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctat 250  Q
    ||||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  ||||||||||||| | ||| ||| || ||  ||||| |      
T  9677707 gctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctgtcc 9677608  T
Q  251 tgtgctctccgacgctgcttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaa 350  Q
    |   |||   || || |||||| ||||||| |||| |||||| |||||| ||||||||||| | || |||| |||||||||||||||||||||| || ||    
T  9677607 tc--ctcaaagatgcagcttcttccggtggtcctcgcctctctttcgccaatggtgtatgggtggagaaaaacctttctcttcaaccttccttccaagaa 9677510  T
Q  351 atcatgtcgtctgactataaggccactttggcttccgttgatttcat 397  Q
    | ||||||  | || |||||||||||| | ||||| |||||||||||    
T  9677509 accatgtctaccgattataaggccactctcgcttctgttgatttcat 9677463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 395
Target Start/End: Complemental strand, 9693546 - 9693206
Alignment:
Q  53 tttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgc 152  Q
    |||||||||  |||||||||||| | ||||||||| ||||||| || ||  |||||||||| | |||||| || |||| ||| |||||||| |||||||     
T  9693546 tttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgt 9693447  T
Q  153 tggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattg 252  Q
    ||||||| | ||||| || |  || || ||||| |||||||| || | |||||| |  ||||||||||||| | | | ||| || ||  ||| | |  |     
T  9693446 tggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaacttctttgtctctcatctcctttatgtcctc 9693347  T
Q  253 tgctctccgacgctgcttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 352  Q
      |||   |||||  ||||| ||||||| ||||||||||| |||||| ||||||| ||| |||| |||||||||||||||||||||||||||||| |||     
T  9693346 --ctcaaagacgcaacttcttccggtggtcctcacctctctttcgccaatggtgtgtgggtagagaaaaccctttctcttcaaccttccttcaaagaaac 9693249  T
Q  353 catgtcgtctgactataaggccactttggcttccgttgatttc 395  Q
    ||||||  |||| ||||||||  ||||| |||| |||||||||    
T  9693248 catgtctactgattataaggctgctttgtcttctgttgatttc 9693206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 380
Target Start/End: Original strand, 35160480 - 35160789
Alignment:
Q  69 caaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatggtccc 168  Q
    ||||||| | ||||| ||| |||||||||| |||||||| ||||||| |||||| || |||| |||||||||||| ||| ||||||||||| | ||| |     
T  35160480 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttca 35160579  T
Q  169 acacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaactacctc-gcctcacagcttgtttctctattgtgctctccgacgctg 267  Q
    ||||  || || ||||| |||||||| || | |||||| |||||||||||||||| |||| | ||| || |   ||||   ||  | |||   ||||||     
T  35160580 acacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact-cctcagtctctcatcaactttcc--atcatcctcaaagacgcta 35160676  T
Q  268 cttctgccggtggacctcacctctccttcgccgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgacta 367  Q
    ||||| ||||||| ||||||||||| |||| ||| ||||| ||| | ||||||||||||||||||||| ||||||||||||||||| ||||    || ||    
T  35160677 cttcttccggtggtcctcacctctctttcgtcgacggtgtttggctggaaaaaaccctttctcttcaatcttccttcaaacaaatcgtgtctgaagatta 35160776  T
Q  368 taaggccactttg 380  Q
    |||||||||||||    
T  35160777 taaggccactttg 35160789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 35154336 - 35154413
Alignment:
Q  318 aaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctgactataaggccactttggcttccgttgatttc 395  Q
    ||||||||||||| |||||||||||||||||| ||| || |  | || || |||||||||||| |||| |||||||||    
T  35154336 aaaaccctttctcctcaaccttccttcaaacatatcgtgactaccgattacaaggccactttgtcttctgttgatttc 35154413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 35154071 - 35154243
Alignment:
Q  51 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgct 150  Q
    |||||||||||  |||||||||||| | ||||||||  |||||||||| || ||||| |||||||  ||||| || ||||  |||||    || ||||||    
T  35154071 agtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttgcaatcatcgct 35154170  T
Q  151 gctggctcttatggtcccacacggcagcaacttctagacttcctacgatccaaatcaactgatcatctcaact 223  Q
    ||||||||| | ||| ||||||| || || |||||  ||||||| | || ||||||  |  ||||||||||||    
T  35154171 gctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 15555098 - 15555156
Alignment:
Q  136 ctcagcatgatcgctgctggctcttatggtcccacacggcagcaacttctagacttcct 194  Q
    |||||||| ||||||||||||||| | ||| |||||| ||| |||||||| ||||||||    
T  15555098 ctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 20143699 - 20143752
Alignment:
Q  299 cgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 352  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  20143699 cgatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 20143752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 20169811 - 20169758
Alignment:
Q  299 cgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaat 352  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  20169811 cgatggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 20169758  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 20154380 - 20154488
Alignment:
Q  64 atcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgctattgtccctgcaagatgtgctcagcatgatcgctgctggctcttatg 163  Q
    |||||||||||| ||||||  ||||||||||| || ||||| || ||||||| | |||| || |||| |||| ||||| | | ||||||||||||| | |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  164 gtcccacac 172  Q
    |||||||||    
T  20154480 gtcccacac 20154488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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