View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_26 (Length: 424)

Name: NF7750_low_26
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_26
NF7750_low_26
[»] chr2 (1 HSPs)
chr2 (1-408)||(17922354-17922764)
[»] chr6 (13 HSPs)
chr6 (1-408)||(12949461-12949870)
chr6 (33-262)||(12908064-12908295)
chr6 (33-262)||(12933153-12933384)
chr6 (1-176)||(18555926-18556102)
chr6 (258-404)||(12900658-12900804)
chr6 (10-176)||(12958929-12959096)
chr6 (285-404)||(12959203-12959322)
chr6 (272-387)||(18556194-18556309)
chr6 (123-183)||(12900486-12900546)
chr6 (314-408)||(12908327-12908426)
chr6 (314-408)||(12933406-12933505)
chr6 (41-88)||(12900431-12900478)
chr6 (208-262)||(12900553-12900607)
[»] chr5 (6 HSPs)
chr5 (286-409)||(10613358-10613483)
chr5 (11-146)||(10612583-10612718)
chr5 (255-318)||(10605861-10605924)
chr5 (36-87)||(10716248-10716299)
chr5 (20-121)||(10565883-10565983)
chr5 (265-317)||(10761839-10761891)


Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 17922764 - 17922354
Alignment:
Q  1 ttcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgt---gcatttcaaaattcccaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  17922764 ttcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgttgtgcatttcaaaattcccaa 17922665  T
Q  98 actacaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataa 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922664 actacaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataa 17922565  T
Q  198 tgtactttgctaagaaaatgaatggtcagctggaatcacaagtggcaatgcttagtatactagttgctataaataaacaatgttttctgtattgctttct 297  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922564 tgtactttgctaagaaaatgaatggtcagctggaatcacatgtggcaatgcttagtatactagttgctataaataaacaatgttttctgtattgctttct 17922465  T
Q  298 aattaaatgatgtgagaattgataattctcccatatttatcgtcattctcatctgaattgtcattatagttaattcaatgggtgtcgatttaatcaaatc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17922464 aattaaatgatgtgagaattgataattctcccatatttatcgttattctcatctgaattgtcattatagttaattcaatgggtgtcgatttaatcaaatc 17922365  T
Q  398 tttattaaaat 408  Q
    |||||||||||    
T  17922364 tttattaaaat 17922354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 12949461 - 12949870
Alignment:
Q  1 ttcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaact 100  Q
    |||||||| | ||||||  |||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| | |||    
T  12949461 ttcttatatgcttatttgaatcataaccaactcattaattgcttatgaaattagaattttatttttatcatcttattgtgcatttcaaaattcctagact 12949560  T
Q  101 acaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataatgt 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12949561 acaaaatataatggtaataatgaccttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataatgt 12949660  T
Q  201 actttgctaagaaaatgaatggtcagctggaatcacaagtggcaatgcttagtatactagttgctataaataaacaatgttttctgtattgctttctaat 300  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12949661 actctgctaagaaaatgaatggtcagctggaatcacatgtggcaatgcttagtatactagttgctataaataaacaatgttttctgtattgctttctaat 12949760  T
Q  301 taaa--tgatgtgagaattgataattctcccatatttatcgtcattctcatctgaattgtcattatagttaattcaatgggtgtcgatttaatcaaatct 398  Q
    ||||  |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  12949761 taaatgtgatgtgagaattgataattctcccatatttatcttcattctcatatgaattgtcattgtagttaattcaatgggtgtcgatttaatcaaatct 12949860  T
Q  399 ttattaaaat 408  Q
    ||||||||||    
T  12949861 ttattaaaat 12949870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 33 - 262
Target Start/End: Original strand, 12908064 - 12908295
Alignment:
Q  33 cattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaactacaaaatataatggtaataataaccttcttga 132  Q
    ||||||||||||||||||||||| ||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12908064 cattaattgcttatggaattagagttttatttttatcatcttattttgtatttcaaaattcccaaactacaaaatataatggtaataatgaccttcttga 12908163  T
Q  133 ttttaatttca-ggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataatgtacttt-gctaagaaaatgaatggtcagctgg 230  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||| |||||| |    
T  12908164 ttttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaagatatgcagcataacgtactttggttaagaaaatgaatgttcagcttg 12908263  T
Q  231 aatcacaagtggcaatgcttagtatactagtt 262  Q
    ||||||| || || || ||| || ||||||||    
T  12908264 aatcacatgtcgctatactttgtttactagtt 12908295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 33 - 262
Target Start/End: Original strand, 12933153 - 12933384
Alignment:
Q  33 cattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaactacaaaatataatggtaataataaccttcttga 132  Q
    ||||||||||||| ||||||||| ||||||||| |||||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12933153 cattaattgcttaaggaattagagttttatttttatcatcttattttgtatttcaaaattcccaaactacaaaatataatggtaataatgaccttcttga 12933252  T
Q  133 ttttaatttca-ggtcttgaacaaaatttctaagtcatttgtggaaagagaagttatgcagcataatgtacttt-gctaagaaaatgaatggtcagctgg 230  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||| |||||| |    
T  12933253 ttttaatttcagggtcttgaacaaaatttctaagtcatttgtggaaagagaagatatgcagcataacgtactttggttaagaaaatgaatgttcagcttg 12933352  T
Q  231 aatcacaagtggcaatgcttagtatactagtt 262  Q
    ||||||| || || || ||| || ||||||||    
T  12933353 aatcacatgtcgctatactttgtttactagtt 12933384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 18555926 - 18556102
Alignment:
Q  1 ttcttataagtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaact 100  Q
    |||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  18555926 ttcttataagtttatttgaatcataactaactcattaattgcttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaact 18556025  T
Q  101 acaaaatataatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtc-atttgtgga 176  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  18556026 acaaaatataatggtaataattaccttcttgattttaatttcaggttttgaacaatatttctaagtcaatttgtgga 18556102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 258 - 404
Target Start/End: Original strand, 12900658 - 12900804
Alignment:
Q  258 tagttgctataaataaacaatgttttctgtattgctttctaattaaatgatgtgagaattgataattctcccatatttatcgtcattctcatctgaattg 357  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||    
T  12900658 tagttgttataaataaagaatgttttctgtattgctttctaattaaatgaagtgagaattgataattctcccatatttatcttcattctcatatgaattg 12900757  T
Q  358 tcattatagttaattcaatgggtgtcgatttaatcaaatctttatta 404  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  12900758 tcattgtagttaattcaatgggtgtcgatttaatcaaatctttatta 12900804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 12958929 - 12959096
Alignment:
Q  10 gtttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaactacaaaatat 109  Q
    ||||||||  |||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  12958929 gtttatttgaatcataactaactcattaattggttatggaattagaattttatttttatcatcttattgtgcatttcaaaattcccaaactataaaatat 12959028  T
Q  110 aatggtaataataaccttcttgattttaatttcaggtcttgaacaaaatttctaagtc-atttgtgga 176  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  12959029 aatggtaataatgaccttcttgattttaatttcaggttttgaacaaaatttctaagtcaatttgtgga 12959096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 285 - 404
Target Start/End: Original strand, 12959203 - 12959322
Alignment:
Q  285 tgtattgctttctaattaaatgatgtgagaattgataattctcccatatttatcgtcattctcatctgaattgtcattatagttaattcaatgggtgtcg 384  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||||| | |||||||||||||||||||||    
T  12959203 tgtattgctttctaattaaataatgtgagaattgataattctcccatatttatcttcattctcataagaattgtcactgtagttaattcaatgggtgtcg 12959302  T
Q  385 atttaatcaaatctttatta 404  Q
    ||||||||| ||||| ||||    
T  12959303 atttaatcatatcttgatta 12959322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 18556194 - 18556309
Alignment:
Q  272 aaacaatgttttctgtattgctttctaattaaatgatgtgagaattgataattctcccatatttatcgtcattctcatctgaattgtcattatagttaat 371  Q
    ||||||| || | ||||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||||| ||||  ||||||||| | ||||||||    
T  18556194 aaacaatattgtttgtattgctttctaattaactaatgttagaattgataattctcccatatttatcttcattttcatacgaattgtcactgtagttaat 18556293  T
Q  372 tcaatgggtgtcgatt 387  Q
    ||||||||||||||||    
T  18556294 tcaatgggtgtcgatt 18556309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 12900486 - 12900546
Alignment:
Q  123 accttcttgattttaatttcaggtcttgaacaaaatttctaagtcatttgtggaaagagaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  12900486 accttcttgattttaatttcaggtcttgaacaaaatttctaagtcgtttgtgcaaagagaa 12900546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 12908327 - 12908426
Alignment:
Q  314 aattgataattctcccatatttat-----cgtcattctcatctgaattgtcattatagttaattcaatgggtgtcgatttaatcaaatctttattaaaat 408  Q
    ||||||||||||||||||||||||     | ||||||||||  ||||||||| | |||||||||||||||||||  ||||||||||||||||||||||||    
T  12908327 aattgataattctcccatatttattttatcttcattctcataagaattgtcaatgtagttaattcaatgggtgtatatttaatcaaatctttattaaaat 12908426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 314 - 408
Target Start/End: Original strand, 12933406 - 12933505
Alignment:
Q  314 aattgataattctcccatatttat-----cgtcattctcatctgaattgtcattatagttaattcaatgggtgtcgatttaatcaaatctttattaaaat 408  Q
    ||||||||||||||||||||||||     | ||||||||||  ||||||||| | |||||||||||||||||||  ||||||||||||||||||||||||    
T  12933406 aattgataattctcccatatttattttatcttcattctcataagaattgtcaatgtagttaattcaatgggtgtatatttaatcaaatctttattaaaat 12933505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 12900431 - 12900478
Alignment:
Q  41 gcttatggaattagaattttattttaatcatcttgttgtgcatttcaa 88  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12900431 gcttatggaattagaattttatttttatcatcttgttgtgcatttcaa 12900478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 12900553 - 12900607
Alignment:
Q  208 taagaaaatgaatggtcagctggaatcacaagtggcaatgcttagtatactagtt 262  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  12900553 taagaaaatgaatggtccgctggaatcacatgcggcaatgcttagtttactagtt 12900607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 286 - 409
Target Start/End: Original strand, 10613358 - 10613483
Alignment:
Q  286 gtattgctttctaattaaatgatgtgagaattgataattctcccatatttatcgtcattctcatctgaattgtcat--tatagttaattcaatgggtgtc 383  Q
    |||||||||||||||| ||||| ||||||||||||| ||||| |||||||||| ||||| || |  ||||||||||  |||||||||||||||||||||     
T  10613358 gtattgctttctaattcaatgaagtgagaattgatacttctctcatatttatcttcattttcctaagaattgtcatggtatagttaattcaatgggtgtt 10613457  T
Q  384 gatttaatcaaatctttattaaaatt 409  Q
    |||||||||||||||||||| |||||    
T  10613458 gatttaatcaaatctttattgaaatt 10613483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 146
Target Start/End: Original strand, 10612583 - 10612718
Alignment:
Q  11 tttatttcgatcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaactacaaaatata 110  Q
    |||||||  |||||||| ||| || |||||| ||||||| |   ||||| ||||| |||||||| |||||||||||||| |||| ||||| |||||||||    
T  10612583 tttatttgaatcataactaactcaataattgtttatggact---aatttgatttttatcatcttattgtgcatttcaaatttcctaaacttcaaaatata 10612679  T
Q  111 atggtaataataac---cttcttgattttaatttcaggt 146  Q
    || ||||||||  |   ||||||||||| ||||||||||    
T  10612680 atagtaataatggccttcttcttgatttgaatttcaggt 10612718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 10605861 - 10605924
Alignment:
Q  255 tactagttgctataaataaacaatgttttctgtattgctttctaattaaatgatgtgagaattg 318  Q
    |||||||||||||||||||||||| || | ||||||||||||||||| ||| | || |||||||    
T  10605861 tactagttgctataaataaacaatattgtttgtattgctttctaattcaataaagtaagaattg 10605924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 10716299 - 10716248
Alignment:
Q  36 taattgcttatggaattagaattttattttaatcatcttgttgtgcatttca 87  Q
    |||||||||||||||||| ||||| || || |||||||| ||||||||||||    
T  10716299 taattgcttatggaattataatttgatctttatcatcttattgtgcatttca 10716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 10565883 - 10565983
Alignment:
Q  20 atcataaccaacgcattaattgcttatggaattagaattttattttaatcatcttgttgtgcatttcaaaattcccaaactacaaaatataatggtaata 119  Q
    |||||||| ||  ||||| ||| ||||||| |||  |||| ||||| || ||| | || ||||||| |||||||| ||||||||||||| ||||||||||    
T  10565883 atcataactaaatcattatttggttatggagttatcatttgatttttattatcatattttgcattt-aaaattcctaaactacaaaatacaatggtaata 10565981  T
Q  120 at 121  Q
    ||    
T  10565982 at 10565983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 10761891 - 10761839
Alignment:
Q  265 tataaataaacaatgttttctgtattgctttctaattaaatgatgtgagaatt 317  Q
    ||||| |||||||| || | ||||||||||||||||| ||||| |||||||||    
T  10761891 tataagtaaacaatattgtttgtattgctttctaattcaatgaagtgagaatt 10761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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