View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_29 (Length: 399)
Name: NF7750_low_29
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 34139322 - 34139012
Alignment:
| Q |
7 |
tttggtgttgctggaggcgaacagtctgcaacggagcaggttccgcctgaggcagttaggatggttgcgttgacggttatgatgtaagccatggttagaa |
106 |
Q |
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| T |
34139322 |
tttggtgttgctggaggcgaacagtctgcaacggagcaggttccgcctgaggcagttaggatggttgcgttgacggttatgatgtaagccatggttagaa |
34139223 |
T |
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| Q |
107 |
aagtggctgttgcggcacgtagttctttagtgaaacatgtttttctttgttgtagcttgaagtaggttcctatgaagctgtttgcaacggagttgtttat |
206 |
Q |
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| T |
34139222 |
aagtggctgttgcggcacgtagttctttagtgaaacatgtttttctttgttgtaacttgaagtaggttcctatgaagctgtttgcaacggagttgtttat |
34139123 |
T |
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| Q |
207 |
ggatttttccatttgagtgcatgtgttttttagccttgaaaatacaccacatgcttttcctcctcccatatttctcctcctatattaattatgtggagta |
306 |
Q |
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| T |
34139122 |
ggatttttccatttgagtacatgtgttttttagccttgaaaaaacaccacatgcttttcctcctcccatatttc---tcctatattaattatgtgga--- |
34139029 |
T |
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| Q |
307 |
cgtgtgatgagaatgata |
324 |
Q |
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| T |
34139028 |
-gtgtgatgagaatgata |
34139012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 34138995 - 34138931
Alignment:
| Q |
319 |
atgataaggagaagaaggaatgaagtgatattgaaga----tgttttttatgtgtagaatagaga |
379 |
Q |
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| T |
34138995 |
atgataaggagaagaaggaatgaagtgatatcgaagatgtttgttttttatgtgtagaatagaga |
34138931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 43129102 - 43129030
Alignment:
| Q |
59 |
cagttaggatggttgcgttgacggttatgatgtaagccatggttagaaaagtggctgttgcggcacgtagttc |
131 |
Q |
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| T |
43129102 |
cagttagaatggaggcgttgacggcgaggatgtaagccatggtgaggaaagtggcggttccggcacggagttc |
43129030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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