View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_30 (Length: 398)
Name: NF7750_low_30
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 22728537 - 22728905
Alignment:
| Q |
16 |
ctcgaccacatggaattcattatcattatctcatatttctgcgtcttctatgaactttgcaccttt--ttgtttttggaaggatcgacataaatctcaaa |
113 |
Q |
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||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
22728537 |
ctcgatcacgtggaattcattaccattatctcatatttctgcgtcttctatgaactttgcacctttgtttgtttttggaaggatcaacataaatctcaaa |
22728636 |
T |
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| Q |
114 |
cgagtgtgatttctttgattaagtatgggtacacctgtcggcacaaaacaaggtaatagannnnnnnnnnnnnnnnnnaagaaattattagttaatgtta |
213 |
Q |
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| T |
22728637 |
cgagtgtgatttctttgattaagtatgggtacacttgtcggcacaaaacaaggtaatagatttatttttattttttttaagaaattattagttaatgtta |
22728736 |
T |
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| Q |
214 |
tgcatagtcaccttcatatagaagggtggtttgattattgaataattggtaaacttatatgttttgattcttatgcagatgttgttgaaaattaccaaga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22728737 |
tgcatagtcaccttcatatagaagggtggtttgattattgaataattggtaaacttatatgttttgattcttatgcagatgttgttgaaaattaccaaga |
22728836 |
T |
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| Q |
314 |
gatgggttgtttaaatttggttaaggatataatattggagctaaacgtggcataggatgaatggttgct |
382 |
Q |
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| T |
22728837 |
gatgggttatttaaattaggttaaggatataatattggagctaagcgtggcgtagaatgaatggttgct |
22728905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 28840086 - 28840299
Alignment:
| Q |
16 |
ctcgaccacatggaattcattatcattatctcatatttctgcgtcttctatgaactttgcaccttt--ttgtttttggaaggatcgacataaatctcaaa |
113 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
28840086 |
ctcgaccacatggaattcattaccattatctcatatttctgtgtcttctatgaactttgcacctttgtttgtttttggaaggatcaacataaatctcaaa |
28840185 |
T |
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| Q |
114 |
cgagtgtgatttctttgattaagtatgggtacacctgtcggcacaaaacaaggtaatagannnnnnnnnnnnnnnnnnaagaaattattagttaatgtta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
28840186 |
cgagtgtgatttctttgattaagtatgggtacacctgtcggcacaaaacaaggtaattga-------tttttttttttaagaaattattagttaatgtta |
28840278 |
T |
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| Q |
214 |
tgcatagtcaccttcatatag |
234 |
Q |
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||||||||||||||||||||| |
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| T |
28840279 |
tgcatagtcaccttcatatag |
28840299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 234 - 382
Target Start/End: Original strand, 28840613 - 28840763
Alignment:
| Q |
234 |
gaagggtggtttgattattgaataattggtaaacttatatgttttgattcttat--gcagatgttgttgaaaattaccaagagatgggttgtttaaattt |
331 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28840613 |
gaagtgtggtttgattattgaataattggtaaacttatatgttttgactcttatatgcagatgttgttgaaaattaccaagagatgggttgtttaaattt |
28840712 |
T |
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| Q |
332 |
ggttaaggatataatattggagctaaacgtggcataggatgaatggttgct |
382 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
28840713 |
ggttaaggatataatattggagctaagcttggcataggatgaatggttgct |
28840763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 27651869 - 27651833
Alignment:
| Q |
105 |
aatctcaaacgagtgtgatttctttgattaagtatgg |
141 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |
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| T |
27651869 |
aatctccaacgagtgtgatttctttgattaaatatgg |
27651833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 30834260 - 30834296
Alignment:
| Q |
104 |
aaatctcaaacgagtgtgatttctttgattaagtatg |
140 |
Q |
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||||||| |||||||||||||||||||||||| |||| |
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| T |
30834260 |
aaatctctaacgagtgtgatttctttgattaaatatg |
30834296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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