View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_31 (Length: 391)
Name: NF7750_low_31
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 21205794 - 21206152
Alignment:
| Q |
1 |
ataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtggaacttgtgatgcaagacactagtattcttggtgccgaaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21205794 |
ataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtggaacttgtgatgcaagacactagtattcttggtgccgaaag |
21205893 |
T |
|
| Q |
101 |
tcaccctctccatttgcatggctttaacttctttgttgttggacaaggatttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgat |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21205894 |
tcaccctctccatttgcatggctttaacttctttgttgttggacaaggatttggtaactacgattcaaataaggatccacaaaaatttaaccttgttgat |
21205993 |
T |
|
| Q |
201 |
cccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggttcctagattattcgtcaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21205994 |
cccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggttcctagattattcgtcaaact |
21206093 |
T |
|
| Q |
301 |
atcaaaagtcattttggtttcaaagaatgttttagttcactttcataaattaacaaaaa |
359 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
21206094 |
atcaaaagtcattttggtttcgaagaatgttttagttcactttcataaattaacaaaaa |
21206152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 372
Target Start/End: Original strand, 21183322 - 21183691
Alignment:
| Q |
3 |
aacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtggaacttgtgatgcaagacactagtattcttggtgccgaaagtc |
102 |
Q |
| |
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||||| |||||||| || |||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
21183322 |
aacaccatggtgagcaacggaacaaaggttacggttcttcctttcaacacaagtgtggagcttgtgatgcaagacactagcattcttggtgcagaaagtc |
21183421 |
T |
|
| Q |
103 |
accctctccatttgcatggctttaacttctttgttgttggacaaggatttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgatcc |
202 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| ||||| ||||||||||| |
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| T |
21183422 |
atcctctccatttgcatggctttaacttctttgttgttggacaaggatttggtaactacgattcaaataaggaccccaaaaactttaatcttgttgatcc |
21183521 |
T |
|
| Q |
203 |
cgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggttcctagattattcgtcaaactat |
302 |
Q |
| |
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|| || || || ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
21183522 |
tgtcgagagaaacacaattggtgtcccatctggtggatgggttgctatcagattccttgcagataatcctggttggttcctagattattcgtcaaactat |
21183621 |
T |
|
| Q |
303 |
caaaagtcattttggtttcaaagaatgttttagttcactttcataaattaacaaaaatgtctaattgtgt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21183622 |
caaaagtcattttggtttcaaagaatgttttagttcactttcataaattaacaaaaatgtctaattgtgt |
21183691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 21854024 - 21854304
Alignment:
| Q |
1 |
ataacactatggtgagtaatggaacaaaggttgttgttcttccttttaacacaagtgtggaacttgtgatgcaagacactagtattcttggtgccgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||| |
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| T |
21854024 |
ataacactatggtgagtaatggaacaaaggttgtggttcttccttttaacactagtgtggagcttgtgttgcaagacactagtattcttggtgttgaaag |
21854123 |
T |
|
| Q |
101 |
tcaccctctccatttgcatggctttaacttctttgttgttggacaaggatttggtaactaccattcaaataaggatccacaaaaatttaaccttgttgat |
200 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||| |
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| T |
21854124 |
tcaccctcttcatttgcatggatttaacttctttgttgttggacaaggatttggtaactttgattcaaatagtgatccacaaaattttaatcttgttgat |
21854223 |
T |
|
| Q |
201 |
cccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggttc |
281 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
21854224 |
cctgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttagttc |
21854304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 279
Target Start/End: Original strand, 22603631 - 22603840
Alignment:
| Q |
70 |
tgcaagacactagtattcttggtgccgaaagtcaccctctccatttgcatggctttaacttctttgttgttggacaaggatttggtaactaccattcaaa |
169 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||| | ||| | ||||| | | | || ||||||||||||||||| ||||| || || || | || |
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|
| T |
22603631 |
tgcaagatactagtattcttggtgctgagagtcaccctttgcatcttcatggttatgatttttttgttgttggacaaggttttggaaattatgatgctaa |
22603730 |
T |
|
| Q |
170 |
taaggatccacaaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataat |
269 |
Q |
| |
|
||| ||||| ||||||||| | |||||||| ||||||||||| || ||||||||||| ||||||| |||||||| || ||||| | || |||||| |
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|
| T |
22603731 |
taaagatcctgcaaaatttaatttggttgatcctgttgaaaggaacactgttggtgttcctgctggtggttgggttgccattagattttttgcggataat |
22603830 |
T |
|
| Q |
270 |
ccaggttggt |
279 |
Q |
| |
|
|||||||||| |
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|
| T |
22603831 |
ccaggttggt |
22603840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 22635406 - 22635329
Alignment:
| Q |
198 |
gatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
275 |
Q |
| |
|
||||| || ||||||||||| | |||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| |
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|
| T |
22635406 |
gatcctgtcgaaaggaatactgctggtgttccagctggtggatgggttgctttgagattccttgcagataatccaggt |
22635329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 373
Target Start/End: Original strand, 21206167 - 21206195
Alignment:
| Q |
345 |
ataaattaacaaaaatgtctaattgtgtt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21206167 |
ataaattaacaaaaatgtctaattgtgtt |
21206195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 4384465 - 4384554
Alignment:
| Q |
186 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
275 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||| ||| ||||||| |||||||| || |||||| ||| |||||||||||| |
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|
| T |
4384465 |
tttaaccttgttgatcctgttgaaaggaacactgttggtgtaccagctggtggttgggttgccattagattcagagctgataatccaggt |
4384554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 24068937 - 24068848
Alignment:
| Q |
186 |
tttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
275 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||| |||| ||| || |||||||| |||||||| || ||||||| || || ||||||||| |
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|
| T |
24068937 |
tttaatcttgttgatcctgttgagaggaatactgttgctgtgccttctggtggttgggttgcgatacgattccttgctgacaatccaggt |
24068848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 29554653 - 29554733
Alignment:
| Q |
195 |
gttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggt |
275 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |
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|
| T |
29554653 |
gttgatcctgtggagagaaatacagttggtgttccatctggtggatggactgctatcagattcagggctgataatccaggt |
29554733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 35054857 - 35054897
Alignment:
| Q |
111 |
catttgcatggctttaacttctttgttgttggacaaggatt |
151 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
35054857 |
catttgcatgggttcaatttctttgttgttggacaaggatt |
35054897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 35071599 - 35071639
Alignment:
| Q |
111 |
catttgcatggctttaacttctttgttgttggacaaggatt |
151 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
35071599 |
catttgcatgggttcaatttctttgttgttggacaaggatt |
35071639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 25093265 - 25093364
Alignment:
| Q |
181 |
aaaaatttaaccttgttgatcccgttgaaaggaatacagttggtgttccatctggtggatgggttgctatcagattcctagcagataatccaggttggtt |
280 |
Q |
| |
|
|||| ||||| ||||||||||| || || ||||||||||| ||||||||| |||| || ||| ||||||||||||| || |||||||||||| |||| |
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|
| T |
25093265 |
aaaagtttaatcttgttgatcctgtggagaggaatacagtaggtgttccagctggaggttggactgctatcagattcaaggctgataatccaggtaggtt |
25093364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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