View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_34 (Length: 379)
Name: NF7750_low_34
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 35 - 363
Target Start/End: Complemental strand, 41572907 - 41572578
Alignment:
| Q |
35 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgac |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41572907 |
tccggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatggc |
41572808 |
T |
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| Q |
135 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572807 |
gtgttgaggtggctatggagcttccggttaacatgtttctgctgtgggaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgttt |
41572708 |
T |
|
| Q |
235 |
gatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggctgtgaag |
333 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41572707 |
gatttggcatgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtcaggtggagggtacggtggaggctgtgaag |
41572608 |
T |
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| Q |
334 |
gttatatcgaggagatgtattctttgccgt |
363 |
Q |
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| T |
41572607 |
gttatatcgtggagatgtattcttagccgt |
41572578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 9e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 38 - 363
Target Start/End: Original strand, 27753590 - 27753924
Alignment:
| Q |
38 |
ggacgattcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtg |
137 |
Q |
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| T |
27753590 |
ggacgattcggtgaattgtgttctgtgtgaggggaatccggagtcggcaagtcactt-ttcattcaatgctcctttgctaaggaggggtggaatggggtg |
27753688 |
T |
|
| Q |
138 |
ttgaggtgg---------ctatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggatt |
228 |
Q |
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||||||| | ||||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27753689 |
ctgaggtgttagagatgaccttggagcttccgatcaatttgtttctgctgtgggaggattggaatgtggcagcagggagtaataagatccgtaagggatt |
27753788 |
T |
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| Q |
229 |
ccgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgtc-ggtggagggtacggtggaggct |
327 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| || |||||||| ||||||||||||| |
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| T |
27753789 |
ccggttgatttggcacgccgtagtgtggaatttatggagggtgagaaatgaccgaattttcaaaaatgcggtttatcgggtggaggatacggtggaggct |
27753888 |
T |
|
| Q |
328 |
gtgaaggttatatcgaggagatgtattctttgccgt |
363 |
Q |
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||||||||||| ||| ||||||| ||||| ||||| |
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| T |
27753889 |
gtgaaggttatgtcgtggagatggtttcttagccgt |
27753924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 10909566 - 10909508
Alignment:
| Q |
233 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
291 |
Q |
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|||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||| |
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| T |
10909566 |
ttgatttggcacgccgcggtttggagtttatggagggtgagaaatgatcgaattttcaa |
10909508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 350
Target Start/End: Complemental strand, 21942311 - 21942108
Alignment:
| Q |
148 |
tatggagcttccggttaacatgtttctgctgtggaaggaatggaatgtggcagcagggagtaacaagatccgtaagggattccgtttgatttggcacgcc |
247 |
Q |
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||||||||||| | | || ||||| |||||||| ||| |||||||||||||| || | ||| ||| || ||||| ||||| ||| ||||||| ||| |
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| T |
21942311 |
tatggagcttctgttaaatttgtttgtgctgtgggaggtctggaatgtggcagcgggtaataatgggattcgcaagggcttccggttggtttggcatgcc |
21942212 |
T |
|
| Q |
248 |
gtagtgtggaatttattgagggtgagaaatgatcgaattttcaaaaatgtggtttgt-cggtggagggtacggtggaggctgtgaaggttatatcgagga |
346 |
Q |
| |
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|| ||||| ||| | | ||||||||||||||||| ||||||||||||| |||||| |||| ||| |||||||||||| |||||||| || ||| ||| |
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| T |
21942211 |
gtcgtgtgaaatctttggagggtgagaaatgatcttattttcaaaaatgcagtttgtggggtgaaggatacggtggaggcagtgaaggtaatgtcgtgga |
21942112 |
T |
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| Q |
347 |
gatg |
350 |
Q |
| |
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|||| |
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| T |
21942111 |
gatg |
21942108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 26728609 - 26728711
Alignment:
| Q |
44 |
ttcggtgaattgtgttttgtgtgaggggaatccggagtcggcgagtcacttgttcattcaatgtgtgtttgctatggaggtttggaatgacgtgttgagg |
143 |
Q |
| |
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|||||||| ||||||||||||||||||||| | ||||| | || ||| ||||||||||| ||| ||||||||||||||| ||||| | ||||| |||| |
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| T |
26728609 |
ttcggtgagctgtgttttgtgtgaggggaatgcagagtccgtgaatcatttgttcattcattgtaagtttgctatggaggtgtggaaaggcgtgtggagg |
26728708 |
T |
|
| Q |
144 |
tgg |
146 |
Q |
| |
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||| |
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| T |
26728709 |
tgg |
26728711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 13725863 - 13725921
Alignment:
| Q |
233 |
ttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaattttcaa |
291 |
Q |
| |
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|||||||||||||||| || |||| ||||| ||||| ||||||||||||||||||||| |
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| T |
13725863 |
ttgatttggcacgccgcggtttggagtttatggagggcgagaaatgatcgaattttcaa |
13725921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 26728806 - 26728864
Alignment:
| Q |
230 |
cgtttgatttggcacgccgtagtgtggaatttattgagggtgagaaatgatcgaatttt |
288 |
Q |
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|||||||||||||| ||||| ||||||| | ||| ||||| ||||||||| |||||||| |
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| T |
26728806 |
cgtttgatttggcatgccgtggtgtggagtatatggagggcgagaaatgagcgaatttt |
26728864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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