View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_35 (Length: 378)
Name: NF7750_low_35
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 2861993 - 2862259
Alignment:
| Q |
13 |
aatatgtgcttgagcaatagacacaaggaaattgttatatgtacatcatcgtcctaaagcttataacaatatcccattcagaattcaactatgaatggaa |
112 |
Q |
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| T |
2861993 |
aatatgtgcttgagcaatagacacaaggaaattgttatatgtacatcatcgtcctaaagcttataacaatatcccattcaggattcaactatgaatggaa |
2862092 |
T |
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| Q |
113 |
atgtatttcacttgagagattgcagggaaaatgtctcgaatgagtatagattccatcatttttaaaatgcttcgcagtgatttttctactttgctttttt |
212 |
Q |
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| T |
2862093 |
atgtatttcacttgagagattgcagggaaaatgtttcgaatgagtatagattccatcatttttaaaatgcttcgcagtgatttttctactttgctttttt |
2862192 |
T |
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| Q |
213 |
agaaaatcatggcaacagttaaaattcttactgtaaggatcaagttcaagaccctatttttgcatta |
279 |
Q |
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| T |
2862193 |
agaaaatcatggcaacagttaaaattcttactgtaaggatcaagttcaagaccctttttttgcatta |
2862259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 2862494 - 2862557
Alignment:
| Q |
298 |
tatcacttaataactcattttcatgttatcaacttaaaagttacataaatatctcccttatcat |
361 |
Q |
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| T |
2862494 |
tatcacttaataacacattttcatgttatcaacttgaaagttacataaatatctcccttatcat |
2862557 |
T |
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