View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_37 (Length: 362)
Name: NF7750_low_37
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 346
Target Start/End: Original strand, 40179492 - 40179825
Alignment:
| Q |
4 |
agttgaaggtgtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatagtgacaaaatggaatggagc |
103 |
Q |
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| T |
40179492 |
agttgaaggtgtgccggcgttagagcaatgtaataaagaggatgaaaatgaagaggatgaggatgaggctattgttgatagtgacaaaatggaatggagc |
40179591 |
T |
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| Q |
104 |
actgaggaggaaaacaatgagacaaacatgaatggaaatatggttaacagtgcattcaaagcaccaaatgctaagaaatccaacattgtaggggggctca |
203 |
Q |
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| T |
40179592 |
actgaggaggaaaacaatgagacaaacat---------tatggttaacagtccattcaaagcaccaaatgctaagaaatccaacattgtaggggggctca |
40179682 |
T |
|
| Q |
204 |
aagtgacacctcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagtttcgtaattatatttcaat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40179683 |
aagtgacacctcctccaccaatcacactgcctggttctgcaggtaacattttttcatttcatcttaatgttcattttcagtttcgtaattatatttcagt |
40179782 |
T |
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| Q |
304 |
caatttgattgtactattgctcaaaaatgatcattgtcttgtt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40179783 |
caatttgattgtactattgctcaaaaatgatcattgtcttgtt |
40179825 |
T |
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