View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_38 (Length: 354)
Name: NF7750_low_38
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_38 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 15239423 - 15239070
Alignment:
| Q |
1 |
cttgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgct |
100 |
Q |
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| T |
15239423 |
cttgaagatttttcgcgcaaccaatgtcccgaaaaataagagctgttccgacataggtaggactaatggtcctaatgttgtgatgtttgttttgagtgct |
15239324 |
T |
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| Q |
101 |
tctccggcaacagccattaggtcttttgagagtgatacaccgacttgctttgtgtcgtcttcttcttgaaagacacagccgtaggatttgttgtctgcac |
200 |
Q |
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| T |
15239323 |
tctccggcaacagccattaggtcttttgagagtgatacaccgacttgctttgtgtcgtcttcttcttgaaagacgcagccgtaggatttgttgtctgcac |
15239224 |
T |
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| Q |
201 |
ctttgtgcgttcggacggtgtggactagttggtattttgatcggaggcggtcgcgtggcttgttggagaggagaactgctgctcctcccattctaaagag |
300 |
Q |
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| T |
15239223 |
ctttgtgcgttcggacggtgtggactagttggtattttgatcggaggcggtcgcgtggcttgttggagaggagaactgctgctcctcccattctaaagag |
15239124 |
T |
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| Q |
301 |
acaatttggcactagcattgatctgtcgttgccgaaataccagtttagtattat |
354 |
Q |
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| T |
15239123 |
acaatttggcactagcattgatctgtcgttgccgaaataccagtttagtgttat |
15239070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 345
Target Start/End: Complemental strand, 34053082 - 34052778
Alignment:
| Q |
41 |
agctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgcttctccggcaacagccattaggtcttttgagagtgatacac |
140 |
Q |
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| T |
34053082 |
agctgttctgacataggaagtaccaatggaccaagtgttgtgatgttggttttcagtgcttctccggcaaccgccattaaatcttttgagagtgatacac |
34052983 |
T |
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| Q |
141 |
cgacttgctttgtg-tcgtcttcttcttgaaagacacagccgtaggatttgttgtctgcacctttgtgcgttcggacggtgtggactagttggtattttg |
239 |
Q |
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| T |
34052982 |
caa-ttgatttcttctcatcttcttcttggaagacacaaccatatgatctgtcgtccgcgcctttatgtgttcggacggtgtggatcagttggtatttag |
34052884 |
T |
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| Q |
240 |
atcggaggcggtcgcgtggcttgttggagaggagaactgctgctcctcccattctaaagagacaatttggcactagcattgatctgtcgttgccgaaata |
339 |
Q |
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| T |
34052883 |
ctcttttgctgtcagaagctttgttggagaggagaattgctgatcctcccattctaaacagacaatttgatactaacattgatctgtcattgccgaaata |
34052784 |
T |
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| Q |
340 |
ccagtt |
345 |
Q |
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| T |
34052783 |
ccagtt |
34052778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 48672060 - 48671999
Alignment:
| Q |
41 |
agctgttctgacataggtagaactaatggtcctaatgttgtgatgtttgttttgagtgcttc |
102 |
Q |
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| T |
48672060 |
agctgttctgaaaagggtaggaccaatggtcctagtgttgtgatgttagttttgagagcttc |
48671999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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