View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_4 (Length: 598)
Name: NF7750_low_4
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 583
Target Start/End: Original strand, 37195389 - 37195940
Alignment:
| Q |
19 |
tttctgatctaaatctaacaaacgtcgatacactgaaaacaagatatcccaacagcaggaggcagtatctttaataccagtcgtatcaggtcgtatcaac |
118 |
Q |
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| T |
37195389 |
tttctgatataagtctaacaaacgtcgatacactgaaaacaagatatcccaacagcaggaggcagtatctttaataccagtcgtatca----------ac |
37195478 |
T |
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| Q |
119 |
attaagcatagtcatatgctaacttttatttcattttttgacaaaatatgctcactcacttttatgtatcttcagttattcaccatcaagaagaaaaaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37195479 |
attaagcatagtcatatgctaacttttatttcattttttgacaaaatatgctcactcacttttatgtatcttcagttattcaccatcaaga---aaaaga |
37195575 |
T |
|
| Q |
219 |
tggctaactagtaactacaaacatataggacctctaaaaaggcataaagtgggtcactttttgcatccacttttgtcatcacttattaaattaaaacggg |
318 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195576 |
tggctaactagtaactacaaacatagaggacctctaaaaaggcataaagtgggtcactttttgcatccacttttgtcatcacttattaaattaaaacggg |
37195675 |
T |
|
| Q |
319 |
gtcaatgcacaccaattttttacgacatttaaaatcaaatattgatgaggtttactgtgtattcctttttaggtgccttattttaaactannnnnnnctt |
418 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
37195676 |
gtcaatgcacaccaattttttacaacatttaaaatcaaatattgatgaggtttactgtgtattgctttttaggtgccttattttaaactatttttttctt |
37195775 |
T |
|
| Q |
419 |
ctcactattcttcatctggtaagaaagtgaccaagctaggtaacttgttcaatgagtctaaggttattgtattacattctaatgcactagttggttaaaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195776 |
ctcactattcttcatctggtaagaaagtgaccaagctaggtaacttgttcaatgagtctaaggttattgtattacattctaatgcactagttggttaaaa |
37195875 |
T |
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| Q |
519 |
gttccaactaacctttgttatttaccgactcatgttattaaatgttgacaaggaactgtattcat |
583 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37195876 |
gttctaactaacctttgttatttaccgactcatgttattaaatgttgacaaggaactgtattcat |
37195940 |
T |
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