View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_45 (Length: 321)

Name: NF7750_low_45
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_45
NF7750_low_45
[»] chr1 (1 HSPs)
chr1 (14-311)||(52708973-52709270)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 52709270 - 52708973
Alignment:
Q  14 aacctgtgtaaagaaataacagccatgcctgagaaatgatgacgctcaatgacagattgcagacaaatatttgatgtaagcaagtaaaaactaacatgac 113  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52709270 aaccagtgtaaagaaatagcagccatgcctgagaaatgatgacgctcaatgacagattgcagacaaatatttgatgtaagcaagtaaaaactaacatgac 52709171  T
Q  114 atgaagcaagagtcgttaaaaagaaagtacctggtaaatctgtactggaaaagctggcaaacatccctcccaaacccaagatcttagaatgagaagtgct 213  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52709170 atgaagcaagagtggttaaaaagaaagtacctggtaaatctgtactggaaaagctggcaaacatccctcccaaacccaagatcttagaatgagaagtgct 52709071  T
Q  214 gctggaaaaagcaggaatagcagagcagttctatcctgaacaaaagatgtgccgttttcataaaagtttcacaaacattgtgttgtgtcgtgtgtgcg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  52709070 gctggaaaaagcaggaatagcagagcagttctatcctgaacaaaagatgtgccattttcataaaagtttcacaaacattgtgttgtgttgtgagtgcg 52708973  T

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