View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7750_low_49 (Length: 302)

Name: NF7750_low_49
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7750_low_49
NF7750_low_49
[»] chr5 (1 HSPs)
chr5 (1-284)||(11172914-11173210)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 11172914 - 11173210
Alignment:
Q  1 caaaattagcaaatgataaattgatttatagcaacaatgaccataatatataataatcccaggtgaaata-----------------tataatatggaaa 83  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||    
T  11172914 caaaattaccaaatgataaattgatatttagcaacaatgaccataatatataataatcccaggtgaaataattcaagtacatatatatataatatggaaa 11173013  T
Q  84 acaacattataccctccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattaacttatgagtccatattcaccaatgatgagaaaca 183  Q
    |||   |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  11173014 aca---ttataccccccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattagcatatgaatccatattcaccaatgatgagaaaca 11173110  T
Q  184 aagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggctttcactgaaggtattgttctcgaagtctatc 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11173111 aagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggc-ttcactgaaggtattgttctcgaagtctatc 11173209  T

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