View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_5 (Length: 592)
Name: NF7750_low_5
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 249 - 574
Target Start/End: Original strand, 9761576 - 9761901
Alignment:
| Q |
249 |
gttaatggcaattttcatttctcactctataacttgctacgattaccaaaacattgaaaacaatggagatacctttgtagcgcgagcatcgaggctattg |
348 |
Q |
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| T |
9761576 |
gttaatggcaattttcatttctcactctataacttgctacgattaccaaaacattgaaaacaatggagatacctttgtagcgcgagcatcgaggctattg |
9761675 |
T |
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| Q |
349 |
taaacaagttcctcaacgattcttgtgaagtcgaacaacgaaaatgcagaacgaattgagctacgaacagattccggtaaaggtcttaccgtcgccatca |
448 |
Q |
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| T |
9761676 |
taaacaagttcctcaacgattcttgtgaagtcgaacaacgaaaatgcagaacgaattgagctacgaacagattccggtaaaggtcttaccgtcgccatca |
9761775 |
T |
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| Q |
449 |
cgcttcgctgctacgatcgcgatgaagatgcggaattctagggtttctgattgaaacgtcgacgttttggaagcttcactaataatggcggttgattcaa |
548 |
Q |
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| T |
9761776 |
cgcttcgctgctacgatcgcgatgaagatgcggaattctagggtttctgattgaaacgtcgacgttttggaagcttcactaataatggcggttgattcaa |
9761875 |
T |
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| Q |
549 |
actgaaacttgcaaaagtgacgtgtg |
574 |
Q |
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| T |
9761876 |
actgaaacttgcaaaagtgacgtgtg |
9761901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 9761350 - 9761538
Alignment:
| Q |
18 |
atacttcagattgaaggcgtgtctaacaagtggttgcattcaattactatattttctaacataattaccggtgtcggtgtcagtgtcatgtcatgtccgg |
117 |
Q |
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| T |
9761350 |
atacttcagattgaaggcgtgtttaacaagtggttgcattcaactactatattttctaacataattaccggtgtcagtgtcagtgtc-----atgtccgg |
9761444 |
T |
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| Q |
118 |
tatccggtgtgagagctacaatgataaatatacatttctctaaaaatgaaaaatttaccgtcatcaactactttcaagtagcagcttccaatat |
211 |
Q |
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| T |
9761445 |
tatccggtgtgagagctacaatgataaatatacatttctctaaaaatgaaaaatttaccgtcatcaactactttcaagtagcagcttccaatat |
9761538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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