View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_50 (Length: 298)
Name: NF7750_low_50
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 962336 - 962191
Alignment:
| Q |
8 |
acattattcttatctgatcatggaggtgaaaggagaatttcttgtgt--tactttttgtgttaggagattaagcctgcatgcgcaacaacttgcacatgc |
105 |
Q |
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| T |
962336 |
acattattcttatctgatcatggaggtgaaaggagaatttcttgtgtgttactttttgtgttaggagattaagcatgcatgcgcaacaacttgcacatgc |
962237 |
T |
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| Q |
106 |
tattattatgacatttaaattccatggctttaatttggttctttacgca |
154 |
Q |
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| T |
962236 |
ta---ttatgacatttaaattccatggctttaatttggttctttacgca |
962191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 282
Target Start/End: Complemental strand, 962133 - 962008
Alignment:
| Q |
159 |
gaatgtactatatttgaaatttgaaatgtaaggatataaatgcttctaattccaggtgcatgcaaattgagagtaaagttaatgcatgca----tgcacg |
254 |
Q |
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| T |
962133 |
gaatgtactatatttgaaatttgaaatgtaaggata--aatccttctaattccaggtacatgcaaattgagagtaaagttaatgcatgcatgcatgcaca |
962036 |
T |
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| Q |
255 |
tagataattcagaatttgataataatat |
282 |
Q |
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| T |
962035 |
tagataattcagaatttgataataatat |
962008 |
T |
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