View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_59 (Length: 264)
Name: NF7750_low_59
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 10566090 - 10565850
Alignment:
| Q |
18 |
gccacatgtgatacaagcttgaccaataagtttcttaacaactgtgcatcaagctgaattgctaattatgagtttgagcacctgaaattcaaatcaagaa |
117 |
Q |
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| T |
10566090 |
gccacatgtgatacatgcttggccaataagtttcttaacaactgtgcatcaagctgaattgctaattatgagtttgagcacctgaaattcaaatcaagaa |
10565991 |
T |
|
| Q |
118 |
gaaatccattattaccattgtattttgtagtttaggaattttaaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
10565990 |
gaaatccattattaccattgtattttgtagtttaggaattttaaatgcaaaatatgataataaaaatcaaatgataactccataaccaaataatgattta |
10565891 |
T |
|
| Q |
218 |
gttatgattcgaatacacataaaaatatcagttcatctcac |
258 |
Q |
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| T |
10565890 |
gttatgattcgaatacacataaaaatatcagtttatctcac |
10565850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 10582080 - 10581842
Alignment:
| Q |
20 |
cacatgtgatacaagcttgaccaataagtttcttaacaactgtgcatcaagctgaattgctaattatgagtttgagcacctgaaattcaaatcaagaaga |
119 |
Q |
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| T |
10582080 |
cacatgtgcttcaagcttgacctataagtttcgtaaaaactgcgcatcaagctgaattgctaattacaagtttgagcacctgaaattcaaatcaaaaaga |
10581981 |
T |
|
| Q |
120 |
aatccattattaccattgtattttgtagtttaggaattttaaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagt |
219 |
Q |
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| T |
10581980 |
aatccattattaccattgtattttgaagtttaggaatattaaatgcaaaatatgataataaaaatcaaatgataactccataaccaaataatgatttagt |
10581881 |
T |
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| Q |
220 |
tatgattcgaatacacataaaaatatcagttcatctcac |
258 |
Q |
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| T |
10581880 |
tatgattcgaatacacataaaaatatcagtttatctcac |
10581842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 10612718 - 10612585
Alignment:
| Q |
97 |
acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat |
195 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||| ||| ||||||| |||| ||||||||||||||||| | |
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| T |
10612718 |
acctgaaattcaaatcaagaagaaggccattattactattatattttgaagtttaggaaatttgaaatgcacaataagatgataaaaatcaaattag--- |
10612622 |
T |
|
| Q |
196 |
tccataaccaaataatgatttagttatgattcgaata |
232 |
Q |
| |
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||||||| ||| || ||| ||||||||||||| |||| |
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| T |
10612621 |
tccataaacaattattgagttagttatgattcaaata |
10612585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 10716250 - 10716322
Alignment:
| Q |
160 |
aaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagttatgattcgaata |
232 |
Q |
| |
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||||||| |||| ||||||||| ||||||| |||||||||||| ||| || || |||||||| |||| |||| |
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| T |
10716250 |
aaatgcacaataagatgataaagatcaaattataattccataagcaattatagagttagttattattcaaata |
10716322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 11048127 - 11048203
Alignment:
| Q |
83 |
ttatgagtttgagcacctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt |
159 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||| ||| ||||| || ||||||||||||| |||| |||||| |
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| T |
11048127 |
ttatgagtgtgaacacctgaaattcaaatcaagaggaagcttgttattgcctttgtattttgtaggttagaaatttt |
11048203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 18556071 - 18555914
Alignment:
| Q |
97 |
acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat |
195 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||| ||||||||||||| |||||||| ||||||| |||| |||||||||||| |||| |||| |
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| T |
18556071 |
acctgaaattaaaatcaagaaggta---attattaccattatattttgtagtttgggaattttgaaatgcacaataagatgataaaaataaaattctaat |
18555975 |
T |
|
| Q |
196 |
tccataaccaaataatgatttagttatgattcgaatacac--ataaaaatatcagttcatc |
254 |
Q |
| |
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||||||| ||| |||||| ||||||||||||| |||| || |||| |||||||||||||| |
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| T |
18555974 |
tccataagcaattaatgagttagttatgattcaaataaacttataagaatatcagttcatc |
18555914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 12949606 - 12949445
Alignment:
| Q |
97 |
acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat |
195 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||| |||| |||||||||||| |||| |||| |
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| T |
12949606 |
acctgaaattaaaatcaagaaggt---cattattaccattatattttgtagtctaggaattttgaaatgcacaataagatgataaaaataaaattctaat |
12949510 |
T |
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| Q |
196 |
tccataaccaaataatgatttagttatgattcgaata--cacataaaaatatcagttcatctcac |
258 |
Q |
| |
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| T |
12949509 |
ttcataagcaattaatgagttggttatgattcaaataagcatataagaatatcagttcatctcac |
12949445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 12959065 - 12958932
Alignment:
| Q |
97 |
acctgaaattcaaatcaagaagaaatccattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataat |
195 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||| |||||| |||||| |||||||| ||||||| |||| |||||||||||| |||| |||| |
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| T |
12959065 |
acctgaaattaaaatcaagaaggt---cattattaccattatattttatagtttgggaattttgaaatgcacaataagatgataaaaataaaattctaat |
12958969 |
T |
|
| Q |
196 |
tccataaccaaataatgatttagttatgattcgaata |
232 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||| |
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| T |
12958968 |
tccataaccaattaatgagttagttatgattcaaata |
12958932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 12908153 - 12908016
Alignment:
| Q |
124 |
cattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagttat |
222 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||| ||| ||||||||||| ||| |||||| ||||||| |
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|
| T |
12908153 |
cattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataaaaataaaactctaattccataagcaattaatgacgtagttat |
12908054 |
T |
|
| Q |
223 |
gattcgaatacacataaa--aatatcagttcatctcac |
258 |
Q |
| |
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||||| |||| | ||| | |||||||||||||||||| |
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|
| T |
12908053 |
gattctaataaagatataggaatatcagttcatctcac |
12908016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 258
Target Start/End: Complemental strand, 12933242 - 12933105
Alignment:
| Q |
124 |
cattattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgatgataaaaatcaaatgataattccataaccaaataatgatttagttat |
222 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||| ||| ||||||| ||| ||| |||||| ||||||| |
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|
| T |
12933242 |
cattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataaaaataaaactctaattccttaagcaattaatgacgtagttat |
12933143 |
T |
|
| Q |
223 |
gattcgaatacacataaa--aatatcagttcatctcac |
258 |
Q |
| |
|
||||| |||| | ||| | |||||||||||||||||| |
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|
| T |
12933142 |
gattctaataaagatataggaatatcagttcatctcac |
12933105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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