View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_6 (Length: 574)
Name: NF7750_low_6
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 90 - 560
Target Start/End: Complemental strand, 28804332 - 28803862
Alignment:
| Q |
90 |
tcattaagaagaaagattcacattctcttaagttactcataagtcagaagttaaacatgcattaccaacttaactagtccaacacaatatttacaagatt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28804332 |
tcattaagaagaaagattcacattctcttaagttactcataagtcataagttaaacatgcattaccaacttaactagtcctacacaatatttacaagatt |
28804233 |
T |
|
| Q |
190 |
acaacatgttgaatctactcctaaaatctccaacacaagcaaagcatagcatcttttcatacacacaaaaacaacataatccacaatttcatcatttccc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28804232 |
acaacatgttgaatctactcctaaaatctccaacacaagcaaagcatagcatcttttcatacacataaaaacaacataatccacaatttcatcatttccc |
28804133 |
T |
|
| Q |
290 |
ccaaaatacacttcaaattaggttttcacatttccacttccatttcttctggatcagattcagggtcagattcactctcaggaacaaacgctttcactct |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28804132 |
ccaaaatacacttcaaattaggttttcacatttccacttccatttcttctggatcagattcagggtcagattcactctcaggagcaaacgctttcactct |
28804033 |
T |
|
| Q |
390 |
aactctattagccacagttttgatcctcatcttctttccatcaagttcaaactgagaccctccatccacaggatacctcaaaggcaaactcatatgatag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28804032 |
aactctattagccacagttttgatcctcatcttctttccatcaagttcaaactgagaccctccatccacaggatacctcaaaggcaaactcatatgatag |
28803933 |
T |
|
| Q |
490 |
caatagtattgttcctttccctccaccatagactctgaatccgggggattcacggctgtaccgtgaaatgt |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28803932 |
caatagtattgttcctttccctccaccatagactctgaatccgggggattcacggctgtaccgtgaaatgt |
28803862 |
T |
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