View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7750_low_62 (Length: 253)
Name: NF7750_low_62
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_62 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 10761283 - 10761504
Alignment:
| Q |
19 |
gaaacatgttatttggcactattcaaagccgagagacaataatgtggctgaaataagaacatcgtgttatagttttgggccttcaggcctaaaggaagtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10761283 |
gaaacatgttatttggcactattcaaagtcgagagacaataatgtggctgaaataagaacatcgtgttatagttttgggccttcaggcctaaaggaagtg |
10761382 |
T |
|
| Q |
119 |
ccacgtgaaggagtcatgatggggtacacgtgtcgtttggcagaacgcgagagacataagagtattgtgagacctgatgcacttaatcaaacactcatta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10761383 |
ccacgtgaaggagtcatgatggggtacacgtgtcgtttggcagaacgcgagagacataagagtattgtgagacctgatgcacttaatcaaacactcatta |
10761482 |
T |
|
| Q |
219 |
atgtggtacaccactttcattt |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10761483 |
atgtggtacaccactttcattt |
10761504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University