View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_65 (Length: 250)
Name: NF7750_low_65
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_65 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 21205553 - 21205793
Alignment:
| Q |
10 |
aagaatatcgataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaaccaaacttgtcagggactcaatggagcaatgtttgtgg |
109 |
Q |
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| T |
21205553 |
aagaaaatcgataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaaccaaacttgtcagggactcaatggaacaatgtttgtgg |
21205652 |
T |
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| Q |
110 |
catcagtgaacaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag |
209 |
Q |
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| T |
21205653 |
catcaatgaacaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag |
21205752 |
T |
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| Q |
210 |
taaacctttgaatccattcaactataccggcacgccaccga |
250 |
Q |
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| T |
21205753 |
taaacctttgaatccattcaactataccggcacgccaccga |
21205793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 21853789 - 21854015
Alignment:
| Q |
19 |
gataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaa---ccaaacttgtcagggactcaatggagcaatgtttgtggcatcag |
115 |
Q |
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| T |
21853789 |
gataagcactttttcttcacagtaggtcttggtacaaatccttgccaaaacaagaaccaaacatgtcaaggacctaatggaacaatgtttgcggcatcgg |
21853888 |
T |
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| Q |
116 |
tgaacaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaaaacaatggaatttacaccactgatttcccaagtaaacc |
215 |
Q |
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| T |
21853889 |
tgaacaatgtttctttcataatgccaaccacagcacttcttcagacacatttctttggacaaaacaatggaatttacaccactgatttcccaagtaaacc |
21853988 |
T |
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| Q |
216 |
tttgaatccattcaactataccggcac |
242 |
Q |
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| T |
21853989 |
tatgaatccattcaactataccggcac |
21854015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 21183088 - 21183246
Alignment:
| Q |
19 |
gataaacactttttcttcacagtaggcattggtactaacccttgtcaaagcaaccaaacttgtcagggactcaatggagcaatgtttgtggcatcagtga |
118 |
Q |
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| T |
21183088 |
gataaacactttttcttcacagtaggccttggtacgaacccttgtcaaagcaaccaaacatgtcagggacccaatggaacaatgtttgcagcatcagtga |
21183187 |
T |
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| Q |
119 |
acaatgtatctttcacaatgccaactacagcacttcttcaatcccatttctttggacaa |
177 |
Q |
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| T |
21183188 |
acaatgtatctttcacaatgccaaccactgcacttcttcaatcccacttcactggacaa |
21183246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 14156259 - 14156108
Alignment:
| Q |
58 |
ccttgtcaaagcaaccaaacttgtcagggactcaatggagcaatgtttgtggcatcagtgaacaatgtatctttcacaatgccaactacagcacttcttc |
157 |
Q |
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| T |
14156259 |
ccttgtcagaacaaccaaacttctcaggaacccagtggaacaatgattgcagcatcagtaaacaatgtatcattctcactctcaaacacaacacttcttc |
14156160 |
T |
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| Q |
158 |
aatcccatttctttggacaaaacaatggaatttacaccactgatttcccaag |
209 |
Q |
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| T |
14156159 |
aatctcatttctttggacaatctaatggagtttacactcctgatttcccaag |
14156108 |
T |
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