View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_68 (Length: 247)
Name: NF7750_low_68
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31821856 - 31822084
Alignment:
| Q |
1 |
ggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaa |
100 |
Q |
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| T |
31821856 |
ggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaa |
31821955 |
T |
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| Q |
101 |
aactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgatt |
200 |
Q |
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| T |
31821956 |
aactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgatt |
31822055 |
T |
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| Q |
201 |
aatcacaagtataattctagcctaataaa |
229 |
Q |
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| T |
31822056 |
aatcacaagtataattctagcctaataaa |
31822084 |
T |
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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 35688765 - 35688829
Alignment:
| Q |
6 |
atgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgt |
70 |
Q |
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| T |
35688765 |
atgtttgttggagactctttgaatagaaaccagtgggaatcaatggtttgtatggttcaatctgt |
35688829 |
T |
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