View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_7 (Length: 535)
Name: NF7750_low_7
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 224 - 526
Target Start/End: Complemental strand, 40289420 - 40289125
Alignment:
| Q |
224 |
taggattgttccagccatggttcaaattcaagtacagtcgatcaattcgaccttaactggagttcattaaatagccacttgtgtccaaccacttagttaa |
323 |
Q |
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| T |
40289420 |
taggattgttccagccatggttcaaattcaagtacagtcgatcaattcgaccttaactggagttcattaaatagccacttgtgtccaaccacttagttaa |
40289321 |
T |
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| Q |
324 |
cttataatcagtttgttacatccaaatataaaactgtggacatgacttaagagacttacatggtatctgacggccccaaagaggaacaagtcctttatac |
423 |
Q |
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| T |
40289320 |
cttataatcagtttgttacatccaaatataaaactgtggacatgacttaagagacttacatggtatctgacggccccaaagaggaacaagtcctttatac |
40289221 |
T |
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| Q |
424 |
aacctgcacatcatatgaaattttgatcaaatttnnnnnnnnnnnnntacaaaatcttaaactactaatttactatgatgcaccgatacagacatgaaca |
523 |
Q |
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| T |
40289220 |
aacctgcacatcatatgaaattttgatcaaattt-------ggggggtacaaaatcttaaactactaatttactatgaagcaccgatacagacatgaaca |
40289128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40289807 - 40289580
Alignment:
| Q |
1 |
tgcattctacattctttcaagtctttgctaatgctaggtaccttcttcacctttct--agacaatagnnnnnnngacgagtctttatctaacaagagagt |
98 |
Q |
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| T |
40289807 |
tgcattctacattctttcaagtctttgctaatgctaggtaccttcttcacctttctctagacaatagtttttttgacgagtctttatctaacaagagagt |
40289708 |
T |
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| Q |
99 |
actaagttgtactttctacactgctaagttgttacagctaannnnnnnnnngtcttaactctagttttcaagaaagcggaccttagtaatatggagtttg |
198 |
Q |
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| T |
40289707 |
actaagttgtactttatacactgctaagttgttagagctaatgttttttttgtcttaactctagttttcaagaaagcggaccttagtaatatggagtttg |
40289608 |
T |
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| Q |
199 |
gccgagaggtaagttaaccataacctag |
226 |
Q |
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| T |
40289607 |
gccgagaggtaagttaaccataacctag |
40289580 |
T |
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