View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7750_low_70 (Length: 244)
Name: NF7750_low_70
Description: NF7750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7750_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 20555055 - 20555286
Alignment:
| Q |
1 |
ttatatggagcattctctagcattactttagcaagtttatcattgtatgatgctaacagtttaaccatttcaagaaacctacctctattttttgaactag |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
20555055 |
ttatatggagcattctctagcactactttagcaagttcatcattgtatgatgctaacagtttaaccatttcaagaaatttacctctattttttgaagtag |
20555154 |
T |
|
| Q |
101 |
gtttttcgtcatggcctctaaaagcacaagcttgaaaagtgagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctc |
200 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20555155 |
gtttttcgtcatgtcctctaaaagcacaagattgaaaagtgagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctc |
20555254 |
T |
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| Q |
201 |
ggaactttgctcattaagtgcaaatctgatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
20555255 |
ggaactttgctcattaagtgcaaatctgatgt |
20555286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1196812 - 1197043
Alignment:
| Q |
1 |
ttatatggagcattctctagcattactttagcaagtttatcattgtatgatgctaacagtttaaccatttcaagaaacctacctctattttttgaactag |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1196812 |
ttatatggagcattctctagcactactttagcaagttcatcattgtatgatgctaacagtttaaccatttcaagaaagttacctctattttttgaactag |
1196911 |
T |
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| Q |
101 |
gtttttcgtcatggcctctaaaagcacaagcttgaaaagtgagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196912 |
gtttttcgtcatggcctctaaaagcacaagcttgaaaagtgaggcaacaaactgaatcaatagagcacctgagacgaagtctattatggaggatttgctc |
1197011 |
T |
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| Q |
201 |
ggaactttgctcattaagtgcaaatctgatgt |
232 |
Q |
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| T |
1197012 |
ggaactttgctcattaagtgcaaatctgatgt |
1197043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1287138 - 1287369
Alignment:
| Q |
1 |
ttatatggagcattctctagcattactttagcaagtttatcattgtatgatgctaacagtttaaccatttcaagaaacctacctctattttttgaactag |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |
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| T |
1287138 |
ttatatggagcattctctagcactactttagcaagttcatcattgtatgatgctaacaatttaaccatttcaagaaagttacctctattctttgaactag |
1287237 |
T |
|
| Q |
101 |
gtttttcgtcatggcctctaaaagcacaagcttgaaaagtgagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1287238 |
gtttttcgtcatggcctctaaaagcacaagcttgaaaagtgaggcaacgaactgaatcgatagagcacctgagacgaagtatattatggaggatttgctc |
1287337 |
T |
|
| Q |
201 |
ggaactttgctcattaagtgcaaatctgatgt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
1287338 |
ggaactttgctcattaagtgcaaatctgatgt |
1287369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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